Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001478/0.001478, allocations: 104.3 kB / 19.77 MB, free: 2.051 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001568/0.001568, allocations: 216.8 kB / 23.07 MB, free: 4.844 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.3/1.3, allocations: 230.7 MB / 256.9 MB, free: 7.742 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1178/0.1178, allocations: 23.89 MB / 337.2 MB, free: 10.91 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane") translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.287e-05/1.287e-05, allocations: 2.281 kB / 472.5 MB, free: 6.953 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane): time 0.08885/0.08887, allocations: 47.05 MB / 0.5074 GB, free: 7.953 MB / 382.1 MB Notification: Performance of NFInst.instExpressions: time 0.27/0.3589, allocations: 106.1 MB / 0.611 GB, free: 11.88 MB / 430.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.004667/0.3635, allocations: 95.25 kB / 0.6111 GB, free: 11.78 MB / 430.1 MB Notification: Performance of NFTyping.typeComponents: time 0.006671/0.3702, allocations: 2.157 MB / 0.6132 GB, free: 9.629 MB / 430.1 MB Notification: Performance of NFTyping.typeBindings: time 0.02947/0.3997, allocations: 10.18 MB / 0.6231 GB, free: 15.51 MB / 446.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.04197/0.4417, allocations: 15.78 MB / 0.6385 GB, free: 15.73 MB / 462.1 MB Notification: Performance of NFFlatten.flatten: time 0.01668/0.4583, allocations: 12.49 MB / 0.6507 GB, free: 3.195 MB / 462.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.007333/0.4657, allocations: 4.596 MB / 0.6552 GB, free: 14.52 MB / 478.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.00869/0.4744, allocations: 5.546 MB / 0.6606 GB, free: 8.957 MB / 478.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.009121/0.4835, allocations: 5.372 MB / 0.6659 GB, free: 3.566 MB / 478.1 MB Notification: Performance of NFPackage.collectConstants: time 0.002274/0.4858, allocations: 0.8789 MB / 0.6667 GB, free: 2.688 MB / 478.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.03699/0.5227, allocations: 13.02 MB / 0.6794 GB, free: 5.645 MB / 494.1 MB Notification: Performance of combineBinaries: time 0.02047/0.5432, allocations: 17.29 MB / 0.6963 GB, free: 4.207 MB / 0.4981 GB Notification: Performance of replaceArrayConstructors: time 0.01055/0.5538, allocations: 9.356 MB / 0.7055 GB, free: 10.77 MB / 0.5137 GB Notification: Performance of NFVerifyModel.verify: time 0.003277/0.557, allocations: 0.7695 MB / 0.7062 GB, free: 10 MB / 0.5137 GB Notification: Performance of FrontEnd: time 0.001235/0.5583, allocations: 303.4 kB / 0.7065 GB, free: 9.703 MB / 0.5137 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 1818 (1814) * Number of variables: 1818 (1812) Notification: Performance of [SIM] Bindings: time 0.2707/0.829, allocations: 41.2 MB / 0.7467 GB, free: 51.84 MB / 0.5137 GB Notification: Performance of [SIM] FunctionAlias: time 0.01058/0.8396, allocations: 7.053 MB / 0.7536 GB, free: 51.17 MB / 0.5137 GB Notification: Performance of [SIM] Early Inline: time 0.04318/0.8828, allocations: 40.27 MB / 0.793 GB, free: 34.82 MB / 0.5137 GB Notification: Performance of [SIM] Simplify 1: time 0.007535/0.8903, allocations: 4.168 MB / 0.797 GB, free: 33.45 MB / 0.5137 GB Warning: NBAlias.setStartFixed: Alias set with conflicting unfixed start values detected. Use -d=dumprepl for more information. Notification: Performance of [SIM] Alias: time 0.03877/0.9291, allocations: 38.94 MB / 0.8351 GB, free: 13.77 MB / 0.5294 GB Notification: Performance of [SIM] Simplify 2: time 0.006148/0.9352, allocations: 3.709 MB / 0.8387 GB, free: 10.02 MB / 0.5294 GB Notification: Performance of [SIM] Remove Stream: time 0.002515/0.9378, allocations: 1.69 MB / 0.8403 GB, free: 8.305 MB / 0.5294 GB Notification: Performance of [SIM] Detect States: time 0.004204/0.942, allocations: 3.905 MB / 0.8441 GB, free: 4.352 MB / 0.5294 GB Notification: Performance of [SIM] Events: time 0.001733/0.9437, allocations: 1.214 MB / 0.8453 GB, free: 3.145 MB / 0.5294 GB Notification: Performance of [SIM] Partitioning: time 0.007758/0.9515, allocations: 6.84 MB / 0.852 GB, free: 12.39 MB / 0.545 GB Error: Internal error NBVariable.makeDummyState failed for $DER.H2O_E.SelfClustering_dG. " [Timeout remaining time 659] [Calling sys.exit(0), Time elapsed: 3.214933396957349] Failed to read output from testmodel.py, exit status != 0: 1.0213608749909326 1.034236551 0.472541558 Calling exit ...