Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009692/0.0009692, allocations: 88.23 kB / 19.42 MB, free: 492 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001773/0.001773, allocations: 169 kB / 22.73 MB, free: 1.82 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.114/1.114, allocations: 177.1 MB / 203.1 MB, free: 5.637 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.727/1.727, allocations: 273.5 MB / 0.5205 GB, free: 14.87 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.863e-06/1.863e-06, allocations: 0 / 0.6463 GB, free: 38.68 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.083e-05/3.269e-05, allocations: 3.5 kB / 0.6463 GB, free: 38.68 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.009207/0.00924, allocations: 11.76 MB / 0.6578 GB, free: 31 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.004911/0.01415, allocations: 2.492 MB / 0.6602 GB, free: 29.26 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0009651/0.01512, allocations: 20.59 kB / 0.6602 GB, free: 29.26 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005641/0.01568, allocations: 299.1 kB / 0.6605 GB, free: 29.09 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001449/0.01713, allocations: 0.7866 MB / 0.6613 GB, free: 28.52 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001125/0.01825, allocations: 0.5917 MB / 0.6619 GB, free: 28.17 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002354/0.02061, allocations: 2.869 MB / 0.6647 GB, free: 26.62 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002523/0.02313, allocations: 3.217 MB / 0.6678 GB, free: 24.71 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002928/0.02606, allocations: 2.571 MB / 0.6703 GB, free: 23.64 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.003095/0.02915, allocations: 1.97 MB / 0.6723 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.00124/0.03039, allocations: 423.1 kB / 0.6727 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0007016/0.0311, allocations: 429.9 kB / 0.6731 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0005499/0.03165, allocations: 0.9276 MB / 0.674 GB, free: 22.52 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001954/0.0336, allocations: 1.299 MB / 0.6752 GB, free: 21.91 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002735/0.03634, allocations: 2.586 MB / 0.6778 GB, free: 20.65 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.558e-06/0.03634, allocations: 5.219 kB / 0.6778 GB, free: 20.64 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.773e-06/0.03634, allocations: 0 / 0.6778 GB, free: 20.64 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 8.809e-05/0.03643, allocations: 0 / 0.6778 GB, free: 20.64 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.004924/0.04135, allocations: 2.894 MB / 0.6806 GB, free: 18.56 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.676e-05/0.04139, allocations: 9.812 kB / 0.6806 GB, free: 18.56 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007543/0.04214, allocations: 377 kB / 0.681 GB, free: 18.38 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001241/0.04339, allocations: 1.092 MB / 0.682 GB, free: 17.5 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.018e-05/0.04348, allocations: 135.2 kB / 0.6822 GB, free: 17.44 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003655/0.04384, allocations: 207 kB / 0.6824 GB, free: 17.36 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003274/0.04712, allocations: 3.044 MB / 0.6853 GB, free: 15.44 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.848e-05/0.04716, allocations: 8.016 kB / 0.6853 GB, free: 15.43 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002063/0.04737, allocations: 77.67 kB / 0.6854 GB, free: 15.38 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.073e-05/0.0474, allocations: 42.56 kB / 0.6855 GB, free: 15.38 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002736/0.05014, allocations: 2.009 MB / 0.6874 GB, free: 14.64 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.009025/0.05916, allocations: 7.104 MB / 0.6944 GB, free: 8.285 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001456/0.06062, allocations: 1.086 MB / 0.6954 GB, free: 7.172 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009601/0.06158, allocations: 0.7304 MB / 0.6961 GB, free: 6.414 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.896e-05/0.06165, allocations: 38 kB / 0.6962 GB, free: 6.379 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001471/0.06312, allocations: 1.591 MB / 0.6977 GB, free: 4.691 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003841/0.06696, allocations: 1.86 MB / 0.6995 GB, free: 2.875 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 8.937e-06/0.06697, allocations: 0 / 0.6995 GB, free: 2.875 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.008156/0.07512, allocations: 5.506 MB / 0.7049 GB, free: 13.23 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001409/0.07526, allocations: 405.8 kB / 0.7053 GB, free: 12.75 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007421/0.07601, allocations: 0.8697 MB / 0.7061 GB, free: 11.86 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001711/0.07618, allocations: 73.7 kB / 0.7062 GB, free: 11.78 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003836/0.07656, allocations: 0.739 MB / 0.7069 GB, free: 11.03 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004996/0.07706, allocations: 0.7282 MB / 0.7077 GB, free: 10.29 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000722/0.07778, allocations: 0.5916 MB / 0.7082 GB, free: 9.691 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001017/0.07788, allocations: 476.8 kB / 0.7087 GB, free: 9.223 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001399/0.07928, allocations: 0.9801 MB / 0.7096 GB, free: 8.184 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001616/0.0809, allocations: 1.644 MB / 0.7112 GB, free: 6.191 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004032/0.08493, allocations: 3.393 MB / 0.7146 GB, free: 2.434 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.347e-06/0.08494, allocations: 4 kB / 0.7146 GB, free: 2.43 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.004022/0.08896, allocations: 3.048 MB / 0.7175 GB, free: 15.26 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001095/0.08907, allocations: 275.2 kB / 0.7178 GB, free: 14.94 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.46e-05/0.08909, allocations: 12 kB / 0.7178 GB, free: 14.93 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.11e-05/0.08912, allocations: 24 kB / 0.7178 GB, free: 14.9 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00196/0.09108, allocations: 0.8308 MB / 0.7187 GB, free: 14.07 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.52e-05/0.09111, allocations: 31.92 kB / 0.7187 GB, free: 14.04 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001116/0.09223, allocations: 95.95 kB / 0.7188 GB, free: 13.95 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002301/0.09246, allocations: 207.7 kB / 0.719 GB, free: 13.74 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008206/0.09328, allocations: 0.5772 MB / 0.7195 GB, free: 13.16 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004428/0.09372, allocations: 223 kB / 0.7197 GB, free: 12.94 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003794/0.09752, allocations: 2.724 MB / 0.7224 GB, free: 10.23 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.147e-05/0.09753, allocations: 20 kB / 0.7224 GB, free: 10.21 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.26e-06/0.09753, allocations: 4 kB / 0.7224 GB, free: 10.21 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.499e-05/0.09755, allocations: 11.95 kB / 0.7224 GB, free: 10.2 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004913/0.1025, allocations: 3.641 MB / 0.726 GB, free: 6.457 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.408e-06/0.1025, allocations: 0 / 0.726 GB, free: 6.457 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001421/0.1039, allocations: 443.2 kB / 0.7264 GB, free: 6.023 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.356e-05/0.1039, allocations: 8 kB / 0.7264 GB, free: 6.016 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001793/0.1041, allocations: 103.8 kB / 0.7265 GB, free: 5.914 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.326e-06/0.1041, allocations: 11.98 kB / 0.7265 GB, free: 5.902 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.743e-06/0.1041, allocations: 0 / 0.7265 GB, free: 5.902 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004116/0.1082, allocations: 3.102 MB / 0.7296 GB, free: 2.699 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006081/0.1088, allocations: 386.6 kB / 0.7299 GB, free: 2.32 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002373/0.1091, allocations: 71.88 kB / 0.73 GB, free: 2.25 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000816/0.1099, allocations: 71.02 kB / 0.7301 GB, free: 2.184 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002645/0.1101, allocations: 169.6 kB / 0.7302 GB, free: 2.016 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001441/0.1103, allocations: 111.8 kB / 0.7303 GB, free: 1.906 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0005026/0.1108, allocations: 0.5959 MB / 0.7309 GB, free: 1.301 MB / 0.5574 GB Notification: Performance of sort global known variables: time 7e-08/0.1108, allocations: 0 / 0.7309 GB, free: 1.301 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.00123/0.112, allocations: 0.6289 MB / 0.7315 GB, free: 0.6719 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000256/0.1123, allocations: 211.8 kB / 0.7317 GB, free: 472 kB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002913/0.1152, allocations: 2.681 MB / 0.7344 GB, free: 13.59 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 2.014e-06/0.1152, allocations: 0 / 0.7344 GB, free: 13.59 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001305/0.1165, allocations: 1.202 MB / 0.7355 GB, free: 12.3 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001409/0.1179, allocations: 0.5684 MB / 0.7361 GB, free: 11.77 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00656/0.1245, allocations: 5.135 MB / 0.7411 GB, free: 6.73 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002243/0.1247, allocations: 333.7 kB / 0.7414 GB, free: 6.379 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001256/0.1259, allocations: 498.8 kB / 0.7419 GB, free: 6.02 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001002/0.1269, allocations: 331.9 kB / 0.7422 GB, free: 5.695 MB / 0.573 GB Notification: Performance of SimCode: time 9.72e-07/0.1269, allocations: 0 / 0.7422 GB, free: 5.695 MB / 0.573 GB Notification: Performance of Templates: time 0.04029/0.1672, allocations: 41.54 MB / 0.7828 GB, free: 13.11 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.02326570590958]