Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001276/0.001276, allocations: 88.23 kB / 19.42 MB, free: 492 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001456/0.001456, allocations: 173 kB / 22.72 MB, free: 1.824 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9944/0.9944, allocations: 177.1 MB / 203.1 MB, free: 5.656 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.661/1.661, allocations: 273.5 MB / 0.5205 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.282e-06/1.282e-06, allocations: 0 / 0.6462 GB, free: 38.64 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.869e-05/1.997e-05, allocations: 2.312 kB / 0.6462 GB, free: 38.64 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005079/0.005099, allocations: 6.726 MB / 0.6528 GB, free: 34.35 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002517/0.007616, allocations: 2.003 MB / 0.6548 GB, free: 32.98 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003742/0.00799, allocations: 15.09 kB / 0.6548 GB, free: 32.98 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005715/0.008562, allocations: 303.8 kB / 0.6551 GB, free: 32.82 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.000566/0.009128, allocations: 466.7 kB / 0.6555 GB, free: 32.5 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007389/0.009867, allocations: 0.5321 MB / 0.656 GB, free: 32.17 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001387/0.01125, allocations: 1.801 MB / 0.6578 GB, free: 31.16 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003321/0.01159, allocations: 261 kB / 0.658 GB, free: 31.01 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0007698/0.01236, allocations: 0.9133 MB / 0.6589 GB, free: 30.57 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000561/0.01292, allocations: 0.5303 MB / 0.6594 GB, free: 30.37 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001917/0.01311, allocations: 168.2 kB / 0.6596 GB, free: 30.37 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003954/0.0135, allocations: 314.5 kB / 0.6599 GB, free: 30.32 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001917/0.0137, allocations: 364.1 kB / 0.6603 GB, free: 30.09 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0004062/0.0141, allocations: 0.5201 MB / 0.6608 GB, free: 29.83 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001109/0.01521, allocations: 1.387 MB / 0.6621 GB, free: 29.08 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.286e-06/0.01521, allocations: 1.125 kB / 0.6621 GB, free: 29.08 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.21e-07/0.01522, allocations: 0 / 0.6621 GB, free: 29.08 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 3.555e-05/0.01525, allocations: 0 / 0.6621 GB, free: 29.08 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.001998/0.01725, allocations: 2.333 MB / 0.6644 GB, free: 27.23 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.561e-05/0.01729, allocations: 12.94 kB / 0.6644 GB, free: 27.23 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007249/0.01801, allocations: 0.5129 MB / 0.6649 GB, free: 27.03 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006841/0.01869, allocations: 0.6863 MB / 0.6656 GB, free: 26.52 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.74e-05/0.01874, allocations: 72.75 kB / 0.6656 GB, free: 26.49 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001358/0.01888, allocations: 111.5 kB / 0.6658 GB, free: 26.45 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.00121/0.02009, allocations: 1.313 MB / 0.667 GB, free: 25.61 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.024e-05/0.02013, allocations: 15.39 kB / 0.6671 GB, free: 25.61 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.585e-05/0.02019, allocations: 40 kB / 0.6671 GB, free: 25.58 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.989e-05/0.02021, allocations: 19.75 kB / 0.6671 GB, free: 25.58 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008802/0.02109, allocations: 0.9677 MB / 0.6681 GB, free: 24.97 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002427/0.02352, allocations: 2.631 MB / 0.6706 GB, free: 23.28 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.00106/0.02458, allocations: 1.172 MB / 0.6718 GB, free: 22.43 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004843/0.02506, allocations: 0.7929 MB / 0.6725 GB, free: 21.78 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.47e-05/0.02512, allocations: 22.36 kB / 0.6726 GB, free: 21.78 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0009927/0.02611, allocations: 1.658 MB / 0.6742 GB, free: 20.46 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 3.136e-06/0.02612, allocations: 3.938 kB / 0.6742 GB, free: 20.46 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.004756/0.03087, allocations: 6.468 MB / 0.6805 GB, free: 15.74 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001612/0.03103, allocations: 1.035 MB / 0.6815 GB, free: 14.52 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008164/0.03185, allocations: 0.9264 MB / 0.6824 GB, free: 14.09 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 7.69e-05/0.03193, allocations: 78.53 kB / 0.6825 GB, free: 14.04 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.000291/0.03222, allocations: 0.5715 MB / 0.6831 GB, free: 13.58 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002627/0.03248, allocations: 0.5252 MB / 0.6836 GB, free: 13.16 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000317/0.0328, allocations: 288.8 kB / 0.6838 GB, free: 13.02 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.719e-05/0.03283, allocations: 483.2 kB / 0.6843 GB, free: 12.55 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006634/0.0335, allocations: 0.9323 MB / 0.6852 GB, free: 11.79 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008396/0.03434, allocations: 1.43 MB / 0.6866 GB, free: 10.38 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002153/0.03649, allocations: 3.002 MB / 0.6895 GB, free: 7.672 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.304e-05/0.0365, allocations: 6.219 kB / 0.6895 GB, free: 7.668 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.002603/0.03911, allocations: 2.767 MB / 0.6922 GB, free: 5.812 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001375/0.03924, allocations: 0.5663 MB / 0.6928 GB, free: 5.168 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.645e-05/0.03926, allocations: 8.469 kB / 0.6928 GB, free: 5.168 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.404e-05/0.0393, allocations: 17.53 kB / 0.6928 GB, free: 5.168 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007335/0.04004, allocations: 338.6 kB / 0.6931 GB, free: 5.133 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.609e-05/0.04006, allocations: 22.41 kB / 0.6932 GB, free: 5.129 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004342/0.0405, allocations: 80.3 kB / 0.6932 GB, free: 5.102 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003022/0.0408, allocations: 253 kB / 0.6935 GB, free: 5.078 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007697/0.04157, allocations: 0.9229 MB / 0.6944 GB, free: 4.242 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000534/0.0421, allocations: 450.8 kB / 0.6948 GB, free: 4.07 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001472/0.04225, allocations: 132.5 kB / 0.6949 GB, free: 3.984 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.018e-05/0.04226, allocations: 13.78 kB / 0.695 GB, free: 3.984 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.02e-05/0.04228, allocations: 1.547 kB / 0.695 GB, free: 3.984 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.372e-05/0.0423, allocations: 8.719 kB / 0.695 GB, free: 3.984 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003222/0.04552, allocations: 3.973 MB / 0.6988 GB, free: 0.5586 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.299e-06/0.04552, allocations: 0 / 0.6988 GB, free: 0.5586 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005817/0.0461, allocations: 223.8 kB / 0.6991 GB, free: 348 kB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.417e-06/0.04611, allocations: 11.98 kB / 0.6991 GB, free: 336 kB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.136e-05/0.04619, allocations: 63.97 kB / 0.6991 GB, free: 272 kB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.451e-06/0.0462, allocations: 7.938 kB / 0.6991 GB, free: 264 kB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.685e-06/0.0462, allocations: 4 kB / 0.6991 GB, free: 260 kB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003242/0.04944, allocations: 4.02 MB / 0.7031 GB, free: 11.92 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.000435/0.04988, allocations: 322.9 kB / 0.7034 GB, free: 11.6 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001637/0.05004, allocations: 67.94 kB / 0.7034 GB, free: 11.54 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003799/0.05042, allocations: 63.95 kB / 0.7035 GB, free: 11.47 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002171/0.05064, allocations: 155.6 kB / 0.7037 GB, free: 11.32 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001832/0.05082, allocations: 229.2 kB / 0.7039 GB, free: 11.1 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005199/0.05134, allocations: 0.5438 MB / 0.7044 GB, free: 10.54 MB / 0.5418 GB Notification: Performance of sort global known variables: time 7e-08/0.05134, allocations: 0 / 0.7044 GB, free: 10.54 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.0008172/0.05216, allocations: 384 kB / 0.7048 GB, free: 10.17 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003649/0.05253, allocations: 290.9 kB / 0.705 GB, free: 9.883 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.002052/0.05458, allocations: 3.156 MB / 0.7081 GB, free: 6.27 MB / 0.5418 GB Notification: Performance of simCode: created event and clocks part: time 1.933e-06/0.05458, allocations: 0 / 0.7081 GB, free: 6.27 MB / 0.5418 GB Notification: Performance of simCode: created simulation system equations: time 0.00107/0.05565, allocations: 1.898 MB / 0.71 GB, free: 4.07 MB / 0.5418 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001093/0.05674, allocations: 406 kB / 0.7104 GB, free: 3.715 MB / 0.5418 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004445/0.06119, allocations: 3.915 MB / 0.7142 GB, free: 15.74 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002307/0.06142, allocations: 306.5 kB / 0.7145 GB, free: 15.42 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0004111/0.06183, allocations: 111.6 kB / 0.7146 GB, free: 15.31 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000169/0.062, allocations: 88.48 kB / 0.7147 GB, free: 15.22 MB / 0.5574 GB Notification: Performance of SimCode: time 1.022e-06/0.062, allocations: 0 / 0.7147 GB, free: 15.22 MB / 0.5574 GB Notification: Performance of Templates: time 0.02354/0.08554, allocations: 22.92 MB / 0.7371 GB, free: 9.434 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.807295181788504]