Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001065/0.001065, allocations: 89.08 kB / 19.42 MB, free: 496 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001816/0.001816, allocations: 169.3 kB / 22.72 MB, free: 1.828 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.038/1.038, allocations: 177.1 MB / 203.1 MB, free: 5.652 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.692/1.692, allocations: 273.5 MB / 0.5205 GB, free: 14.78 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.855e-06/2.855e-06, allocations: 0 / 0.6462 GB, free: 38.69 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.973e-05/3.258e-05, allocations: 2.312 kB / 0.6462 GB, free: 38.68 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005496/0.005529, allocations: 6.882 MB / 0.6529 GB, free: 34.18 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002275/0.007804, allocations: 1.299 MB / 0.6542 GB, free: 33.28 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003999/0.008203, allocations: 10.38 kB / 0.6542 GB, free: 33.27 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002465/0.00845, allocations: 111.5 kB / 0.6543 GB, free: 33.21 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0006156/0.009066, allocations: 340.9 kB / 0.6547 GB, free: 32.96 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006248/0.00969, allocations: 281.7 kB / 0.6549 GB, free: 32.78 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001162/0.01085, allocations: 1.229 MB / 0.6561 GB, free: 32.07 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003441/0.0112, allocations: 173.6 kB / 0.6563 GB, free: 31.96 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0009102/0.01211, allocations: 0.6225 MB / 0.6569 GB, free: 31.68 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006544/0.01276, allocations: 360.6 kB / 0.6572 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001581/0.01292, allocations: 110.2 kB / 0.6573 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001684/0.01309, allocations: 110 kB / 0.6574 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 9.382e-05/0.01318, allocations: 200.5 kB / 0.6576 GB, free: 31.4 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003715/0.01355, allocations: 359.9 kB / 0.658 GB, free: 31.24 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0007268/0.01428, allocations: 0.7219 MB / 0.6587 GB, free: 30.84 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.358e-06/0.01428, allocations: 1.281 kB / 0.6587 GB, free: 30.84 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.333e-06/0.01429, allocations: 0 / 0.6587 GB, free: 30.84 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.15e-05/0.01431, allocations: 0 / 0.6587 GB, free: 30.84 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001648/0.01596, allocations: 1.411 MB / 0.6601 GB, free: 29.73 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.456e-05/0.016, allocations: 9.781 kB / 0.6601 GB, free: 29.73 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002176/0.01622, allocations: 137.7 kB / 0.6602 GB, free: 29.67 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005262/0.01674, allocations: 452.7 kB / 0.6606 GB, free: 29.33 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.7e-05/0.01678, allocations: 47.91 kB / 0.6607 GB, free: 29.31 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001019/0.01688, allocations: 75.72 kB / 0.6608 GB, free: 29.29 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007907/0.01767, allocations: 0.6875 MB / 0.6614 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.172e-05/0.0177, allocations: 6.734 kB / 0.6614 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.112e-05/0.01775, allocations: 27.53 kB / 0.6615 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.589e-05/0.01776, allocations: 16.5 kB / 0.6615 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005371/0.0183, allocations: 475.7 kB / 0.6619 GB, free: 28.59 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001708/0.02001, allocations: 1.944 MB / 0.6638 GB, free: 27.15 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.000724/0.02073, allocations: 0.5678 MB / 0.6644 GB, free: 26.79 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003009/0.02103, allocations: 339.2 kB / 0.6647 GB, free: 26.53 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 4.638e-05/0.02108, allocations: 18.12 kB / 0.6647 GB, free: 26.53 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0006384/0.02172, allocations: 0.9752 MB / 0.6657 GB, free: 25.77 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.154e-06/0.02172, allocations: 0 / 0.6657 GB, free: 25.77 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002871/0.02459, allocations: 2.957 MB / 0.6686 GB, free: 23.72 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.000116/0.0247, allocations: 0.5926 MB / 0.6691 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004163/0.02512, allocations: 0.5194 MB / 0.6697 GB, free: 22.75 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.904e-05/0.02518, allocations: 63.53 kB / 0.6697 GB, free: 22.7 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001529/0.02533, allocations: 349.6 kB / 0.67 GB, free: 22.4 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001733/0.02551, allocations: 357 kB / 0.6704 GB, free: 22.12 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002016/0.02571, allocations: 194.4 kB / 0.6706 GB, free: 22.03 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001261/0.02583, allocations: 0.5608 MB / 0.6711 GB, free: 21.5 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004279/0.02626, allocations: 456.6 kB / 0.6716 GB, free: 21.16 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000521/0.02678, allocations: 0.8667 MB / 0.6724 GB, free: 20.25 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001195/0.02798, allocations: 1.547 MB / 0.6739 GB, free: 18.83 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.665e-05/0.02799, allocations: 3.281 kB / 0.6739 GB, free: 18.83 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.001497/0.02949, allocations: 1.374 MB / 0.6753 GB, free: 17.95 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 9.01e-05/0.02958, allocations: 264.7 kB / 0.6755 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.742e-05/0.0296, allocations: 7.75 kB / 0.6755 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 5.108e-05/0.02965, allocations: 18.78 kB / 0.6755 GB, free: 17.66 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000595/0.03024, allocations: 251.5 kB / 0.6758 GB, free: 17.64 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.967e-05/0.03027, allocations: 18.03 kB / 0.6758 GB, free: 17.63 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004937/0.03077, allocations: 60.45 kB / 0.6758 GB, free: 17.61 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.111e-05/0.03083, allocations: 46.22 kB / 0.6759 GB, free: 17.61 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005537/0.03138, allocations: 0.5562 MB / 0.6764 GB, free: 17.13 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001483/0.03153, allocations: 129.1 kB / 0.6766 GB, free: 17.08 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001019/0.03163, allocations: 83.92 kB / 0.6766 GB, free: 17.02 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.646e-06/0.03164, allocations: 8.406 kB / 0.6766 GB, free: 17.02 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.672e-05/0.03166, allocations: 1.406 kB / 0.6766 GB, free: 17.02 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.077e-06/0.03167, allocations: 11.89 kB / 0.6767 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002022/0.03369, allocations: 2.144 MB / 0.6788 GB, free: 15.62 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.158e-06/0.03369, allocations: 1.406 kB / 0.6788 GB, free: 15.62 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004848/0.03418, allocations: 160.2 kB / 0.6789 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.166e-05/0.03419, allocations: 7.125 kB / 0.6789 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.579e-05/0.03426, allocations: 36.75 kB / 0.6789 GB, free: 15.59 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.751e-06/0.03426, allocations: 3.938 kB / 0.679 GB, free: 15.59 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.208e-06/0.03427, allocations: 10.33 kB / 0.679 GB, free: 15.59 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001543/0.03581, allocations: 1.927 MB / 0.6808 GB, free: 14.3 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002741/0.03608, allocations: 170.4 kB / 0.681 GB, free: 14.2 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001122/0.03619, allocations: 44.27 kB / 0.681 GB, free: 14.18 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000284/0.03648, allocations: 44.48 kB / 0.6811 GB, free: 14.17 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001758/0.03665, allocations: 100.8 kB / 0.6812 GB, free: 14.14 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.607e-05/0.0367, allocations: 38 kB / 0.6812 GB, free: 14.13 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.000276/0.03698, allocations: 349.5 kB / 0.6816 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.03698, allocations: 0 / 0.6816 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.00067/0.03765, allocations: 246.2 kB / 0.6818 GB, free: 13.93 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001665/0.03781, allocations: 189.8 kB / 0.682 GB, free: 13.8 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001044/0.03886, allocations: 1.502 MB / 0.6834 GB, free: 12.62 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.024e-06/0.03886, allocations: 0 / 0.6834 GB, free: 12.62 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0004534/0.03931, allocations: 0.8178 MB / 0.6842 GB, free: 11.96 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008242/0.04014, allocations: 290.5 kB / 0.6845 GB, free: 11.88 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003203/0.04334, allocations: 2.295 MB / 0.6868 GB, free: 10.39 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001454/0.04349, allocations: 178 kB / 0.6869 GB, free: 10.3 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0003462/0.04383, allocations: 88.52 kB / 0.687 GB, free: 10.29 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001473/0.04398, allocations: 76.45 kB / 0.6871 GB, free: 10.27 MB / 0.5262 GB Notification: Performance of SimCode: time 1.844e-06/0.04398, allocations: 1.094 kB / 0.6871 GB, free: 10.27 MB / 0.5262 GB Notification: Performance of Templates: time 0.01615/0.06013, allocations: 14.08 MB / 0.7008 GB, free: 0.543 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.343203178141266]