Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001356/0.001356, allocations: 89.08 kB / 19.42 MB, free: 492 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001623/0.001623, allocations: 173 kB / 22.72 MB, free: 1.824 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.005/1.005, allocations: 177.1 MB / 203.1 MB, free: 5.477 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.689/1.689, allocations: 273.5 MB / 0.5205 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.695e-06/2.695e-06, allocations: 3.938 kB / 0.6462 GB, free: 38.61 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.663e-05/2.933e-05, allocations: 3.875 kB / 0.6462 GB, free: 38.61 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.0176/0.01762, allocations: 11.17 MB / 0.6571 GB, free: 31.31 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.004825/0.02245, allocations: 2.258 MB / 0.6593 GB, free: 29.7 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001212/0.02366, allocations: 18 kB / 0.6593 GB, free: 29.69 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0004944/0.02416, allocations: 229.5 kB / 0.6596 GB, free: 29.55 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001269/0.02543, allocations: 0.6869 MB / 0.6602 GB, free: 29.04 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001175/0.0266, allocations: 0.6293 MB / 0.6608 GB, free: 28.59 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002223/0.02882, allocations: 2.674 MB / 0.6635 GB, free: 27.02 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005496/0.02937, allocations: 363.4 kB / 0.6638 GB, free: 26.78 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001505/0.03088, allocations: 1.365 MB / 0.6651 GB, free: 26.09 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0008842/0.03176, allocations: 0.7354 MB / 0.6659 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002649/0.03203, allocations: 279.1 kB / 0.6661 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000351/0.03238, allocations: 280.8 kB / 0.6664 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002268/0.0326, allocations: 450.6 kB / 0.6668 GB, free: 25.46 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.000644/0.03325, allocations: 0.7584 MB / 0.6676 GB, free: 25.07 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001399/0.03465, allocations: 1.598 MB / 0.6691 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 7.394e-06/0.03465, allocations: 0 / 0.6691 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.994e-06/0.03466, allocations: 1.406 kB / 0.6691 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.533e-05/0.03467, allocations: 0 / 0.6691 GB, free: 24.13 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002756/0.03743, allocations: 2.545 MB / 0.6716 GB, free: 22.21 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 5.335e-05/0.03748, allocations: 9.812 kB / 0.6716 GB, free: 22.21 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003909/0.03787, allocations: 284.5 kB / 0.6719 GB, free: 22.08 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001084/0.03896, allocations: 0.8404 MB / 0.6727 GB, free: 21.46 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.994e-05/0.03903, allocations: 91.11 kB / 0.6728 GB, free: 21.42 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002094/0.03924, allocations: 140.2 kB / 0.6729 GB, free: 21.38 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001817/0.04105, allocations: 1.347 MB / 0.6742 GB, free: 20.54 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.692e-05/0.04111, allocations: 18.58 kB / 0.6743 GB, free: 20.54 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.54e-05/0.04121, allocations: 53.36 kB / 0.6743 GB, free: 20.5 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.679e-05/0.04123, allocations: 27.97 kB / 0.6743 GB, free: 20.5 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001293/0.04253, allocations: 0.9262 MB / 0.6752 GB, free: 20.02 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004337/0.04686, allocations: 4.187 MB / 0.6793 GB, free: 16.96 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001713/0.04858, allocations: 1.149 MB / 0.6805 GB, free: 16.22 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000707/0.04928, allocations: 0.6728 MB / 0.6811 GB, free: 15.7 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 7.477e-05/0.04936, allocations: 29.7 kB / 0.6811 GB, free: 15.7 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001577/0.05093, allocations: 1.921 MB / 0.683 GB, free: 14.23 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.458e-06/0.05094, allocations: 0 / 0.683 GB, free: 14.23 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.007739/0.05868, allocations: 6.462 MB / 0.6893 GB, free: 9.688 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002131/0.05889, allocations: 1.171 MB / 0.6905 GB, free: 8.312 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001203/0.06009, allocations: 0.8928 MB / 0.6913 GB, free: 7.926 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001295/0.06022, allocations: 105.6 kB / 0.6914 GB, free: 7.848 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003468/0.06057, allocations: 0.5755 MB / 0.692 GB, free: 7.375 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004532/0.06102, allocations: 0.6846 MB / 0.6927 GB, free: 6.824 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005071/0.06153, allocations: 370.5 kB / 0.693 GB, free: 6.656 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.532e-05/0.06157, allocations: 482.6 kB / 0.6935 GB, free: 6.184 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009399/0.06251, allocations: 0.8896 MB / 0.6944 GB, free: 5.5 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.00116/0.06367, allocations: 1.727 MB / 0.696 GB, free: 3.625 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002461/0.06613, allocations: 3.096 MB / 0.6991 GB, free: 0.6797 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.016e-05/0.06616, allocations: 8.5 kB / 0.6991 GB, free: 0.6758 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.003068/0.06923, allocations: 2.723 MB / 0.7017 GB, free: 13.82 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002176/0.06944, allocations: 0.5143 MB / 0.7022 GB, free: 13.2 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.165e-05/0.06946, allocations: 16 kB / 0.7023 GB, free: 13.18 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.169e-05/0.06951, allocations: 32.03 kB / 0.7023 GB, free: 13.15 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001043/0.07055, allocations: 0.4953 MB / 0.7028 GB, free: 12.66 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.159e-05/0.07058, allocations: 39.86 kB / 0.7028 GB, free: 12.62 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001058/0.07164, allocations: 111.9 kB / 0.7029 GB, free: 12.51 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001148/0.07175, allocations: 100 kB / 0.703 GB, free: 12.41 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001264/0.07302, allocations: 1.001 MB / 0.704 GB, free: 11.38 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004186/0.07344, allocations: 255 kB / 0.7042 GB, free: 11.12 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002512/0.07369, allocations: 161.6 kB / 0.7044 GB, free: 10.97 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.177e-05/0.0737, allocations: 19.94 kB / 0.7044 GB, free: 10.95 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.195e-05/0.07373, allocations: 4 kB / 0.7044 GB, free: 10.95 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.297e-05/0.07374, allocations: 7.969 kB / 0.7044 GB, free: 10.94 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004609/0.07835, allocations: 4.441 MB / 0.7088 GB, free: 6.305 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.564e-06/0.07836, allocations: 7.938 kB / 0.7088 GB, free: 6.297 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008767/0.07924, allocations: 327.5 kB / 0.7091 GB, free: 5.977 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.136e-05/0.07925, allocations: 8 kB / 0.7091 GB, free: 5.969 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.000118/0.07937, allocations: 71.97 kB / 0.7091 GB, free: 5.898 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.096e-05/0.07938, allocations: 8 kB / 0.7092 GB, free: 5.891 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.956e-06/0.07938, allocations: 0 / 0.7092 GB, free: 5.891 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003626/0.08301, allocations: 3.844 MB / 0.7129 GB, free: 1.809 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007545/0.08376, allocations: 390.7 kB / 0.7133 GB, free: 1.426 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002598/0.08402, allocations: 104 kB / 0.7134 GB, free: 1.324 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005621/0.08458, allocations: 79.95 kB / 0.7135 GB, free: 1.246 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002974/0.08488, allocations: 199.7 kB / 0.7136 GB, free: 1.051 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.678e-05/0.08497, allocations: 79.89 kB / 0.7137 GB, free: 0.9727 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005662/0.08553, allocations: 0.5568 MB / 0.7143 GB, free: 416 kB / 0.5418 GB Notification: Performance of sort global known variables: time 2.7e-07/0.08553, allocations: 0 / 0.7143 GB, free: 416 kB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001361/0.0869, allocations: 0.4883 MB / 0.7147 GB, free: 15.91 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002939/0.08719, allocations: 312.4 kB / 0.715 GB, free: 15.6 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.003007/0.0902, allocations: 3.016 MB / 0.718 GB, free: 12.18 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 3.938e-06/0.0902, allocations: 0 / 0.718 GB, free: 12.18 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001361/0.09156, allocations: 1.64 MB / 0.7196 GB, free: 10.32 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002046/0.09361, allocations: 0.5704 MB / 0.7201 GB, free: 9.801 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006299/0.09991, allocations: 4.49 MB / 0.7245 GB, free: 5.305 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002624/0.1002, allocations: 292.5 kB / 0.7248 GB, free: 4.996 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0008098/0.101, allocations: 186.6 kB / 0.725 GB, free: 4.816 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002569/0.1012, allocations: 136.5 kB / 0.7251 GB, free: 4.684 MB / 0.5574 GB Notification: Performance of SimCode: time 1.813e-06/0.1012, allocations: 0 / 0.7251 GB, free: 4.684 MB / 0.5574 GB Notification: Performance of Templates: time 0.04301/0.1442, allocations: 30.23 MB / 0.7546 GB, free: 7.836 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.600868138950318]