Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001029/0.001029, allocations: 89.08 kB / 19.42 MB, free: 484 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001243/0.001243, allocations: 169 kB / 22.72 MB, free: 1.82 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.017/1.017, allocations: 177.1 MB / 203.1 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.664/1.664, allocations: 273.5 MB / 0.5205 GB, free: 14.83 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.355e-06/2.355e-06, allocations: 0 / 0.6462 GB, free: 38.51 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.728e-05/2.964e-05, allocations: 2.312 kB / 0.6462 GB, free: 38.5 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.002396/0.002425, allocations: 1.294 MB / 0.6475 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0002488/0.002674, allocations: 56.47 kB / 0.6476 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.96e-05/0.002714, allocations: 2.484 kB / 0.6476 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 8.725e-05/0.002801, allocations: 1.375 kB / 0.6476 GB, free: 37.62 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.538e-05/0.002847, allocations: 5.359 kB / 0.6476 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000202/0.003049, allocations: 12.53 kB / 0.6476 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.003227/0.006275, allocations: 149 kB / 0.6477 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 5.365e-05/0.006329, allocations: 6.25 kB / 0.6477 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001457/0.006475, allocations: 72.89 kB / 0.6478 GB, free: 37.55 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001822/0.006657, allocations: 80.2 kB / 0.6479 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.573e-05/0.006693, allocations: 10.56 kB / 0.6479 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.329e-05/0.006716, allocations: 8.594 kB / 0.6479 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.099e-05/0.006757, allocations: 29.47 kB / 0.6479 GB, free: 37.53 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 5.517e-05/0.006812, allocations: 35.39 kB / 0.6479 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001544/0.006966, allocations: 99.61 kB / 0.648 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.928e-06/0.00697, allocations: 1.562 kB / 0.648 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.373e-06/0.006972, allocations: 2.25 kB / 0.648 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.801e-06/0.006977, allocations: 0 / 0.648 GB, free: 37.48 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.001302/0.00828, allocations: 0.592 MB / 0.6486 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 5.133e-05/0.008331, allocations: 9.562 kB / 0.6486 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.631e-05/0.008398, allocations: 9.797 kB / 0.6486 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00016/0.008558, allocations: 128.2 kB / 0.6488 GB, free: 36.96 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.463e-05/0.008572, allocations: 7.562 kB / 0.6488 GB, free: 36.96 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.82e-05/0.0086, allocations: 4.875 kB / 0.6488 GB, free: 36.96 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004007/0.009001, allocations: 156.2 kB / 0.6489 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.381e-05/0.009015, allocations: 192 / 0.6489 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.974e-05/0.009035, allocations: 8.75 kB / 0.6489 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.047e-05/0.009045, allocations: 1.969 kB / 0.6489 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001398/0.009185, allocations: 25.36 kB / 0.649 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002922/0.009477, allocations: 280.9 kB / 0.6492 GB, free: 36.57 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.000109/0.009586, allocations: 46.23 kB / 0.6493 GB, free: 36.54 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001059/0.009692, allocations: 37.88 kB / 0.6493 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.365e-05/0.009716, allocations: 9.031 kB / 0.6493 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.056e-05/0.009736, allocations: 33.39 kB / 0.6493 GB, free: 36.47 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.563e-06/0.009738, allocations: 0 / 0.6493 GB, free: 36.47 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.000376/0.01011, allocations: 112 kB / 0.6495 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.565e-05/0.01014, allocations: 53.34 kB / 0.6495 GB, free: 36.36 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.904e-05/0.01022, allocations: 176.2 kB / 0.6497 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.599e-05/0.01023, allocations: 31.3 kB / 0.6497 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.349e-05/0.01028, allocations: 132.6 kB / 0.6498 GB, free: 36.02 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 3.344e-05/0.01031, allocations: 45.11 kB / 0.6499 GB, free: 35.98 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.609e-05/0.01038, allocations: 39.95 kB / 0.6499 GB, free: 35.95 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.627e-05/0.01043, allocations: 499.2 kB / 0.6504 GB, free: 35.45 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 8.073e-05/0.01051, allocations: 15.23 kB / 0.6504 GB, free: 35.45 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 8.737e-05/0.0106, allocations: 37.09 kB / 0.6504 GB, free: 35.42 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001656/0.01077, allocations: 63.64 kB / 0.6505 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.605e-06/0.01077, allocations: 0 / 0.6505 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0002549/0.01102, allocations: 91.94 kB / 0.6506 GB, free: 35.34 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.758e-05/0.01104, allocations: 5.875 kB / 0.6506 GB, free: 35.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.272e-06/0.01105, allocations: 3.938 kB / 0.6506 GB, free: 35.34 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.125e-05/0.01107, allocations: 1.844 kB / 0.6506 GB, free: 35.34 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003365/0.01141, allocations: 75.92 kB / 0.6507 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.384e-06/0.01141, allocations: 0 / 0.6507 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002104/0.01162, allocations: 60.86 kB / 0.6507 GB, free: 35.32 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.985e-05/0.01164, allocations: 9.141 kB / 0.6507 GB, free: 35.32 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.361e-05/0.01172, allocations: 160.3 kB / 0.6509 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.372e-05/0.01175, allocations: 14.33 kB / 0.6509 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0004237/0.01218, allocations: 180.8 kB / 0.6511 GB, free: 35.06 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.22e-06/0.01218, allocations: 7.688 kB / 0.6511 GB, free: 35.06 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.587e-06/0.01218, allocations: 2.812 kB / 0.6511 GB, free: 35.06 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.528e-06/0.01219, allocations: 3.703 kB / 0.6511 GB, free: 35.06 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001471/0.01234, allocations: 148.1 kB / 0.6512 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.327e-06/0.01234, allocations: 3.625 kB / 0.6512 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003296/0.01267, allocations: 84.98 kB / 0.6513 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.051e-06/0.01267, allocations: 3.25 kB / 0.6513 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.953e-05/0.01269, allocations: 0 / 0.6513 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.358e-06/0.0127, allocations: 5.609 kB / 0.6513 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.345e-06/0.0127, allocations: 8.844 kB / 0.6513 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003086/0.01301, allocations: 173.8 kB / 0.6515 GB, free: 34.77 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 2.038e-05/0.01303, allocations: 16.12 kB / 0.6515 GB, free: 34.77 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.682e-05/0.01306, allocations: 4 kB / 0.6515 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002304/0.01329, allocations: 59.25 kB / 0.6516 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001017/0.01339, allocations: 27.31 kB / 0.6516 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.863e-05/0.01341, allocations: 7.828 kB / 0.6516 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 3.916e-05/0.01345, allocations: 130.3 kB / 0.6517 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 8e-08/0.01345, allocations: 0.5312 kB / 0.6517 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0003217/0.01377, allocations: 31.31 kB / 0.6518 GB, free: 34.62 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 9.394e-05/0.01386, allocations: 100.5 kB / 0.6519 GB, free: 34.53 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0002097/0.01407, allocations: 76.14 kB / 0.6519 GB, free: 34.51 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.553e-06/0.01407, allocations: 0 / 0.6519 GB, free: 34.51 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 8.926e-05/0.01416, allocations: 71.61 kB / 0.652 GB, free: 34.48 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001852/0.01435, allocations: 11.78 kB / 0.652 GB, free: 34.48 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006396/0.01499, allocations: 244.8 kB / 0.6522 GB, free: 34.31 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.849e-05/0.01503, allocations: 65.64 kB / 0.6523 GB, free: 34.24 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 7.634e-05/0.0151, allocations: 31.3 kB / 0.6523 GB, free: 34.23 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 9.514e-05/0.0152, allocations: 24.25 kB / 0.6524 GB, free: 34.22 MB / 0.5262 GB
Notification: Performance of SimCode: time 7.52e-07/0.0152, allocations: 0 / 0.6524 GB, free: 34.22 MB / 0.5262 GB
Notification: Performance of Templates: time 0.004316/0.01951, allocations: 2.873 MB / 0.6552 GB, free: 33.98 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.185052141081542]