Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001033/0.001033, allocations: 88.23 kB / 19.42 MB, free: 492 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001124/0.001124, allocations: 169 kB / 22.72 MB, free: 1.824 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9792/0.9792, allocations: 177.1 MB / 203.1 MB, free: 5.629 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.777/1.777, allocations: 273.5 MB / 0.5205 GB, free: 14.88 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.934e-06/1.934e-06, allocations: 0 / 0.6462 GB, free: 38.64 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.028e-05/2.221e-05, allocations: 5.547 kB / 0.6462 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.001434/0.001456, allocations: 0.521 MB / 0.6467 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001741/0.00163, allocations: 29.77 kB / 0.6468 GB, free: 38.34 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.784e-05/0.001658, allocations: 1.406 kB / 0.6468 GB, free: 38.34 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 2.062e-05/0.001679, allocations: 3.938 kB / 0.6468 GB, free: 38.33 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.729e-05/0.001726, allocations: 1.641 kB / 0.6468 GB, free: 38.33 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001289/0.001855, allocations: 7.938 kB / 0.6468 GB, free: 38.33 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 6.625e-05/0.001921, allocations: 14.38 kB / 0.6468 GB, free: 38.33 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.999e-05/0.001971, allocations: 9.484 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 4.283e-05/0.002014, allocations: 4.844 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 8.138e-05/0.002095, allocations: 13.62 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.081e-05/0.002116, allocations: 1.469 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.09e-05/0.002127, allocations: 1.281 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 1.678e-05/0.002144, allocations: 10.56 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 2.362e-05/0.002168, allocations: 4.156 kB / 0.6468 GB, free: 38.32 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 7.669e-05/0.002244, allocations: 14.81 kB / 0.6468 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.354e-06/0.002247, allocations: 0.75 kB / 0.6468 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 6.21e-07/0.002247, allocations: 0 / 0.6468 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.629e-06/0.002252, allocations: 2.781 kB / 0.6468 GB, free: 38.31 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0003544/0.002606, allocations: 361.9 kB / 0.6472 GB, free: 37.94 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.81e-05/0.002654, allocations: 9.25 kB / 0.6472 GB, free: 37.94 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.111e-05/0.002695, allocations: 4.5 kB / 0.6472 GB, free: 37.94 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 8.343e-05/0.002779, allocations: 119.4 kB / 0.6473 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.355e-05/0.002792, allocations: 1.094 kB / 0.6473 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.26e-05/0.002825, allocations: 5.578 kB / 0.6473 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 9.248e-05/0.002918, allocations: 38.8 kB / 0.6474 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 8.055e-06/0.002926, allocations: 3.375 kB / 0.6474 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.055e-05/0.002936, allocations: 1.562 kB / 0.6474 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.646e-06/0.002945, allocations: 384 / 0.6474 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 2.305e-05/0.002968, allocations: 17.75 kB / 0.6474 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001499/0.003118, allocations: 116.8 kB / 0.6475 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003314/0.003449, allocations: 66.33 kB / 0.6476 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 2.628e-05/0.003475, allocations: 15.11 kB / 0.6476 GB, free: 37.56 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.027e-05/0.003486, allocations: 1.688 kB / 0.6476 GB, free: 37.56 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.854e-05/0.003504, allocations: 33.39 kB / 0.6476 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=3): time 1.242e-06/0.003505, allocations: 1.344 kB / 0.6476 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=3): time 0.0001579/0.003663, allocations: 54.62 kB / 0.6477 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.28e-05/0.003686, allocations: 52 kB / 0.6477 GB, free: 37.42 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.602e-05/0.003742, allocations: 170.3 kB / 0.6479 GB, free: 37.25 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.945e-06/0.00375, allocations: 27.17 kB / 0.6479 GB, free: 37.21 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 2.334e-05/0.003773, allocations: 134.9 kB / 0.648 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.921e-05/0.003803, allocations: 15.11 kB / 0.648 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 3.179e-05/0.003834, allocations: 23.34 kB / 0.6481 GB, free: 37.04 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.267e-05/0.003887, allocations: 493 kB / 0.6485 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 1.996e-05/0.003907, allocations: 8.828 kB / 0.6485 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.615e-05/0.003923, allocations: 9.188 kB / 0.6485 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 7.476e-05/0.003998, allocations: 34.44 kB / 0.6486 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.745e-06/0.004001, allocations: 0 / 0.6486 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 8.778e-05/0.004088, allocations: 62.45 kB / 0.6486 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.534e-05/0.004104, allocations: 5.844 kB / 0.6486 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.39e-06/0.004109, allocations: 1.312 kB / 0.6486 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.847e-05/0.004128, allocations: 2.438 kB / 0.6487 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 6.527e-05/0.004193, allocations: 11.62 kB / 0.6487 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.939e-06/0.004198, allocations: 0 / 0.6487 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 2.311e-05/0.004221, allocations: 14.28 kB / 0.6487 GB, free: 36.47 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.503e-06/0.004228, allocations: 0 / 0.6487 GB, free: 36.47 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.857e-05/0.004326, allocations: 162.8 kB / 0.6488 GB, free: 36.31 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.24e-05/0.004338, allocations: 6.312 kB / 0.6488 GB, free: 36.3 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.947e-05/0.004368, allocations: 15.69 kB / 0.6489 GB, free: 36.29 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.454e-06/0.00437, allocations: 0 / 0.6489 GB, free: 36.29 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.885e-06/0.004373, allocations: 1.938 kB / 0.6489 GB, free: 36.29 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.336e-06/0.004377, allocations: 5.406 kB / 0.6489 GB, free: 36.29 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 6.276e-05/0.004439, allocations: 116 kB / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.134e-06/0.004442, allocations: 3.375 kB / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 6.09e-05/0.004502, allocations: 6.922 kB / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.475e-06/0.004505, allocations: 4.781 kB / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.41e-05/0.004519, allocations: 0 / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.112e-06/0.00452, allocations: 0 / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.253e-06/0.004521, allocations: 0 / 0.649 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001311/0.004652, allocations: 103.8 kB / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 7.715e-06/0.00466, allocations: 3.719 kB / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.316e-05/0.004673, allocations: 0 / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 2.205e-05/0.004695, allocations: 0 / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.708e-05/0.004712, allocations: 5.031 kB / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.119e-06/0.004718, allocations: 4.828 kB / 0.6491 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.384e-05/0.004741, allocations: 127.6 kB / 0.6492 GB, free: 35.93 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 1.1e-07/0.004741, allocations: 2.625 kB / 0.6492 GB, free: 35.93 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0002081/0.00495, allocations: 9.5 kB / 0.6492 GB, free: 35.93 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.758e-05/0.005017, allocations: 94.19 kB / 0.6493 GB, free: 35.84 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.000112/0.005129, allocations: 29.98 kB / 0.6493 GB, free: 35.82 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.392e-06/0.005131, allocations: 0 / 0.6493 GB, free: 35.82 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 2.169e-05/0.005152, allocations: 23.28 kB / 0.6494 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001539/0.005306, allocations: 2.094 kB / 0.6494 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0002448/0.005551, allocations: 140.9 kB / 0.6495 GB, free: 35.67 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.617e-05/0.005577, allocations: 64.39 kB / 0.6496 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 1.753e-05/0.005595, allocations: 3.859 kB / 0.6496 GB, free: 35.59 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 2.573e-05/0.00562, allocations: 10.09 kB / 0.6496 GB, free: 35.59 MB / 0.5262 GB
Notification: Performance of SimCode: time 6.11e-07/0.005621, allocations: 2.703 kB / 0.6496 GB, free: 35.59 MB / 0.5262 GB
Notification: Performance of Templates: time 0.0024/0.008021, allocations: 363.2 kB / 0.6499 GB, free: 35.54 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.979896272066981]