Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001359/0.001359, allocations: 99.75 kB / 18.95 MB, free: 2.832 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001641/0.001641, allocations: 223.1 kB / 22.25 MB, free: 5.102 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.462/1.462, allocations: 230.6 MB / 256 MB, free: 7.828 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1533/0.1533, allocations: 23.92 MB / 336.3 MB, free: 10.96 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002188/0.002188, allocations: 63.91 kB / 471.7 MB, free: 6.977 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3437/0.3459, allocations: 59.87 MB / 0.5191 GB, free: 9.789 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1321/0.478, allocations: 74.28 MB / 0.5916 GB, free: 15.43 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.6343/1.112, allocations: 191.2 MB / 0.7784 GB, free: 16.14 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.02471/1.137, allocations: 232 kB / 0.7786 GB, free: 16.14 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01919/1.156, allocations: 4.453 MB / 0.7829 GB, free: 16.11 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.06265/1.219, allocations: 17.87 MB / 0.8004 GB, free: 15.54 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0825/1.301, allocations: 32.65 MB / 0.8323 GB, free: 15.95 MB / 0.5763 GB
Notification: Performance of NFFlatten.flatten: time 0.111/1.412, allocations: 89.12 MB / 0.9193 GB, free: 2.105 MB / 0.6388 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.09475/1.507, allocations: 52.29 MB / 0.9704 GB, free: 15.68 MB / 0.7013 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.8632/2.37, allocations: 56.57 MB / 1.026 GB, free: 43.93 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0972/2.468, allocations: 52.03 MB / 1.076 GB, free: 41.09 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.04289/2.51, allocations: 12.2 MB / 1.088 GB, free: 41.09 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1146/2.625, allocations: 34.51 MB / 1.122 GB, free: 32.55 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.04777/2.673, allocations: 24.02 MB / 1.146 GB, free: 13 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.1275/2.8, allocations: 39.06 MB / 1.184 GB, free: 12.83 MB / 0.7326 GB
Notification: Performance of NFConvertDAE.convert: time 1.034/3.834, allocations: 159.6 MB / 1.34 GB, free: 108.3 MB / 0.8421 GB
Notification: Performance of FrontEnd - DAE generated: time 5.77e-06/3.834, allocations: 1.188 kB / 1.34 GB, free: 108.3 MB / 0.8421 GB
Notification: Performance of FrontEnd: time 1.182e-06/3.834, allocations: 0 / 1.34 GB, free: 108.3 MB / 0.8421 GB
Notification: Performance of Transformations before backend: time 0.003097/3.837, allocations: 0 / 1.34 GB, free: 108.3 MB / 0.8421 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2664/4.104, allocations: 71.67 MB / 1.41 GB, free: 87.94 MB / 0.8421 GB
Notification: Performance of prepare preOptimizeDAE: time 4.195e-05/4.104, allocations: 11.88 kB / 1.41 GB, free: 87.94 MB / 0.8421 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08863/4.192, allocations: 11.93 MB / 1.421 GB, free: 84.88 MB / 0.8421 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1177/4.31, allocations: 42.63 MB / 1.463 GB, free: 77.53 MB / 0.8421 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.006117/4.316, allocations: 9.237 MB / 1.472 GB, free: 69.02 MB / 0.8421 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03851/4.355, allocations: 4.6 MB / 1.476 GB, free: 67.36 MB / 0.8421 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2988/4.654, allocations: 112.9 MB / 1.587 GB, free: 2.496 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002101/4.656, allocations: 31.22 kB / 1.587 GB, free: 2.484 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.04086/4.697, allocations: 1.758 MB / 1.588 GB, free: 0.7266 MB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001086/4.698, allocations: 1.06 MB / 1.589 GB, free: 15.66 MB / 0.9046 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.7399/5.438, allocations: 153 MB / 1.739 GB, free: 352.3 MB / 0.9514 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.416/6.854, allocations: 389 MB / 2.119 GB, free: 317.8 MB / 0.9514 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.217/9.071, allocations: 0.6474 GB / 2.766 GB, free: 259.1 MB / 0.9514 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.09668/9.167, allocations: 60.06 MB / 2.825 GB, free: 206.4 MB / 0.9514 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.9129/10.08, allocations: 254.6 MB / 3.073 GB, free: 315.7 MB / 0.9514 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002723/10.08, allocations: 338.9 kB / 3.074 GB, free: 315.6 MB / 0.9514 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09979/10.18, allocations: 29.13 MB / 3.102 GB, free: 315.5 MB / 0.9514 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001789/10.18, allocations: 0 / 3.102 GB, free: 315.5 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=3387): time 2.574/12.75, allocations: 423.7 MB / 3.516 GB, free: 315.7 MB / 0.9514 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002607/12.75, allocations: 452.7 kB / 3.516 GB, free: 315.6 MB / 0.9514 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.06495/12.82, allocations: 30.72 MB / 3.546 GB, free: 305.1 MB / 0.9514 GB
Notification: Performance of collectPreVariables (initialization): time 0.01385/12.83, allocations: 0.5713 MB / 3.547 GB, free: 304.7 MB / 0.9514 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01801/12.85, allocations: 21.64 MB / 3.568 GB, free: 292.2 MB / 0.9514 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02712/12.88, allocations: 12.41 MB / 3.58 GB, free: 282.6 MB / 0.9514 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05488/12.93, allocations: 9.931 MB / 3.59 GB, free: 278.8 MB / 0.9514 GB
Notification: Performance of setup shared object (initialization): time 5.095e-05/12.93, allocations: 305.1 kB / 3.59 GB, free: 278.5 MB / 0.9514 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.07109/13, allocations: 39.05 MB / 3.628 GB, free: 262.6 MB / 0.9514 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.08691/13.09, allocations: 53.24 MB / 3.68 GB, free: 222.1 MB / 0.9514 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1568/13.25, allocations: 96.38 MB / 3.774 GB, free: 119.8 MB / 0.9514 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006018/13.25, allocations: 124 kB / 3.775 GB, free: 119.6 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.878/15.13, allocations: 257.1 MB / 4.026 GB, free: 246.2 MB / 0.9514 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0004456/15.13, allocations: 197.2 kB / 4.026 GB, free: 246.2 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.001046/15.13, allocations: 444.6 kB / 4.026 GB, free: 246.2 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1922/15.32, allocations: 73.71 MB / 4.098 GB, free: 198.3 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05729/15.38, allocations: 11.17 MB / 4.109 GB, free: 187.8 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.176/16.55, allocations: 309.6 MB / 4.411 GB, free: 232.8 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.06469/16.62, allocations: 2.47 MB / 4.414 GB, free: 232.1 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01927/16.64, allocations: 2.798 MB / 4.417 GB, free: 231.7 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05892/16.7, allocations: 18.34 MB / 4.435 GB, free: 223.9 MB / 0.9514 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02547/16.72, allocations: 3.172 MB / 4.438 GB, free: 223.9 MB / 0.9514 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.9037/17.63, allocations: 152.3 MB / 4.586 GB, free: 112.6 MB / 0.9514 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0005096/17.63, allocations: 356 kB / 4.587 GB, free: 112.3 MB / 0.9514 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0006323/17.63, allocations: 60 kB / 4.587 GB, free: 112.2 MB / 0.9514 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001433/17.63, allocations: 183.3 kB / 4.587 GB, free: 112.1 MB / 0.9514 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.591/19.22, allocations: 223.2 MB / 4.805 GB, free: 239.1 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003564/19.22, allocations: 7.844 kB / 4.805 GB, free: 239.1 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04433/19.26, allocations: 7.252 MB / 4.812 GB, free: 238.4 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.0973/19.36, allocations: 39.75 MB / 4.851 GB, free: 229.8 MB / 0.9514 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01391/19.38, allocations: 1.447 MB / 4.852 GB, free: 229.2 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3406/19.72, allocations: 155.6 MB / 5.004 GB, free: 99.23 MB / 0.9514 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.746e-06/19.72, allocations: 15.94 kB / 5.004 GB, free: 99.21 MB / 0.9514 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.459/21.18, allocations: 200.2 MB / 5.2 GB, free: 227.3 MB / 0.9514 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.04123/21.22, allocations: 11.32 MB / 5.211 GB, free: 223.6 MB / 0.9514 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01942/21.24, allocations: 0.9126 MB / 5.212 GB, free: 223 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04668/21.28, allocations: 1.547 MB / 5.213 GB, free: 222.5 MB / 0.9514 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02699/21.31, allocations: 4.683 MB / 5.218 GB, free: 221.8 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01265/21.32, allocations: 1.389 MB / 5.219 GB, free: 221.6 MB / 0.9514 GB
Notification: Performance of sorting global known variables: time 0.03957/21.36, allocations: 20.8 MB / 5.239 GB, free: 214 MB / 0.9514 GB
Notification: Performance of sort global known variables: time 2.1e-07/21.36, allocations: 0 / 5.239 GB, free: 214 MB / 0.9514 GB
Notification: Performance of remove unused functions: time 0.1068/21.47, allocations: 20.21 MB / 5.259 GB, free: 210.8 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03646/21.51, allocations: 10.81 MB / 5.27 GB, free: 208 MB / 0.9514 GB
Notification: Performance of simCode: created initialization part: time 0.2244/21.73, allocations: 85.3 MB / 5.353 GB, free: 155.8 MB / 0.9514 GB
Notification: Performance of simCode: created event and clocks part: time 2.211e-05/21.73, allocations: 4 kB / 5.353 GB, free: 155.8 MB / 0.9514 GB
Notification: Performance of simCode: created simulation system equations: time 0.14/21.87, allocations: 54.53 MB / 5.406 GB, free: 107 MB / 0.9514 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06648/21.94, allocations: 7.695 MB / 5.414 GB, free: 99.62 MB / 0.9514 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.775/22.71, allocations: 122.9 MB / 5.534 GB, free: 236.3 MB / 0.9514 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.07091/22.78, allocations: 30.57 MB / 5.564 GB, free: 234 MB / 0.9514 GB
Notification: Performance of simCode: alias equations: time 0.06455/22.85, allocations: 15.44 MB / 5.579 GB, free: 233.5 MB / 0.9514 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02677/22.87, allocations: 4.247 MB / 5.583 GB, free: 233.5 MB / 0.9514 GB
Notification: Performance of SimCode: time 1.273e-06/22.87, allocations: 3 kB / 5.583 GB, free: 233.5 MB / 0.9514 GB
Notification: Performance of Templates: time 3.115/25.99, allocations: 1.075 GB / 6.658 GB, free: 235 MB / 0.9514 GB
"
[Timeout remaining time 634]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 70.3315849150531]
Failed to read output from testmodel.py, exit status != 0:
26.00044746696949 26.013317996 22.175751221
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f8d6851ef50>