Environment - simulationEnvironment: startTime=0 stopTime=1.3 tolerance=1e-06 numberOfIntervals=2500 stepSize=0.00052 Regular simulation (default: the solver the model asks for, DASSL unless it says otherwise): ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Develop.Hemoglobin_titration -abortSlowSimulation -alarm=240 -lv LOG_STATS LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[1].products[1].conc, has value: -3.35588e-22" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[3].products[1].conc, has value: -3.59953e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[4].products[1].conc, has value: -3.35588e-22" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[1].state, has value: -3.35588e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[3].state, has value: -3.59953e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[4].state, has value: -3.35588e-25" LOG_SUCCESS | info | The initialization finished successfully without homotopy method. LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.001040 | | | | ((deoxyhemoglobin.R.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[2].products[1].conc, has value: -6.31105e-30" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.001040 | | | | ((deoxyhemoglobin.R.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[2].state, has value: -6.31105e-33" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].state, has value: -1.61559e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -1.61559e-24" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].state, has value: -1.61559e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -1.61559e-24" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].state, has value: -1.61559e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -1.61559e-24" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].state, has value: -1.61559e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -1.61559e-24" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.003120 | | | | ((deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.oxygenation, has value: -6.46235e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[1].products[1].conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[2].products[1].conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[1].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[2].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.oxygenation, has value: -8.67362e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.009360 | | | | ((deoxyhemoglobin.T.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[4].products[1].conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.009360 | | | | ((deoxyhemoglobin.T.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[4].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.010400 | | | | ((deoxyhemoglobin.T.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[3].products[1].conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.010400 | | | | ((deoxyhemoglobin.T.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[3].state, has value: -2.1684e-19" LOG_STATS | info | ### STATISTICS ### | | | | | timer | | | | | | 0.0256667s reading init.xml | | | | | | 0.00247327s reading info.xml | | | | | | 0.00019192s [ 0.1%] pre-initialization | | | | | | 0.00144496s [ 0.9%] initialization | | | | | | 4.3452e-05s [ 0.0%] steps | | | | | | 0.000558243s [ 0.4%] solver (excl. callbacks) | | | | | | 0s [ 0.0%] creating output-file | | | | | | 0.114747s [ 73.1%] event-handling | | | | | | 0.00044065s [ 0.3%] overhead | | | | | | 0.0394822s [ 25.2%] simulation | | | | | | 0.156909s [100.0%] total | | | | | events | | | | | | 0 state events | | | | | | 0 time events | | | | | solver: dassl | | | | | | 22 steps taken | | | | | | 22 calls of functionODE | | | | | | 21 evaluations of jacobian | | | | | | 0 error test failures | | | | | | 0 convergence test failures | | | | | | 1.8503e-05s time of jacobian evaluation LOG_SUCCESS | info | The simulation finished successfully.