Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001915/0.001915, allocations: 93.06 kB / 19.65 MB, free: 280 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001838/0.001838, allocations: 169 kB / 23.02 MB, free: 1.551 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9911/0.9911, allocations: 177.1 MB / 203.4 MB, free: 5.633 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.05298/0.05298, allocations: 12.76 MB / 272.7 MB, free: 284 kB / 250.7 MB " [Timeout remaining time 180] Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.503e-06/1.503e-06, allocations: 0 / 346.7 MB, free: 1.215 MB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 1.505e-05/1.655e-05, allocations: 6.25 kB / 346.7 MB, free: 1.207 MB / 266.7 MB Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC): time 0.00713/0.007146, allocations: 10.59 MB / 357.3 MB, free: 6.578 MB / 282.7 MB Notification: Performance of NFInst.instExpressions: time 0.01313/0.02028, allocations: 11.51 MB / 368.8 MB, free: 11.02 MB / 298.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.001067/0.02135, allocations: 99 kB / 368.9 MB, free: 10.93 MB / 298.7 MB Notification: Performance of NFTyping.typeComponents: time 0.0007013/0.02205, allocations: 408 kB / 369.3 MB, free: 10.52 MB / 298.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'. Notification: Performance of NFTyping.typeBindings: time 0.004628/0.02668, allocations: 2.203 MB / 371.5 MB, free: 8.312 MB / 298.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. Notification: Performance of NFTyping.typeClassSections: time 0.003528/0.0302, allocations: 2.01 MB / 373.5 MB, free: 6.297 MB / 298.7 MB Notification: Performance of NFFlatten.flatten: time 0.002722/0.03293, allocations: 2.876 MB / 376.4 MB, free: 3.406 MB / 298.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0005569/0.03348, allocations: 388.1 kB / 376.8 MB, free: 3 MB / 298.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001063/0.03455, allocations: 1.368 MB / 378.2 MB, free: 1.629 MB / 298.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.00114/0.03569, allocations: 1.246 MB / 379.4 MB, free: 384 kB / 298.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0001827/0.03587, allocations: 144 kB / 379.5 MB, free: 240 kB / 298.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0002352/0.0361, allocations: 156 kB / 379.7 MB, free: 84 kB / 298.7 MB Notification: Performance of NFScalarize.scalarize: time 0.0003327/0.03644, allocations: 0.5448 MB / 380.2 MB, free: 15.54 MB / 314.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0005011/0.03694, allocations: 0.7167 MB / 381 MB, free: 14.82 MB / 314.7 MB Notification: Performance of NFConvertDAE.convert: time 0.001489/0.03843, allocations: 1.876 MB / 382.8 MB, free: 12.93 MB / 314.7 MB Notification: Performance of FrontEnd - DAE generated: time 3.778e-06/0.03843, allocations: 0 / 382.8 MB, free: 12.93 MB / 314.7 MB Notification: Performance of FrontEnd: time 1.172e-06/0.03843, allocations: 0 / 382.8 MB, free: 12.93 MB / 314.7 MB Notification: Performance of Transformations before backend: time 1.715e-05/0.03845, allocations: 0 / 382.8 MB, free: 12.93 MB / 314.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 287 * Number of variables: 287 Notification: Performance of Generate backend data structure: time 0.00253/0.04098, allocations: 2.594 MB / 385.4 MB, free: 10.29 MB / 314.7 MB Notification: Performance of prepare preOptimizeDAE: time 4.467e-05/0.04102, allocations: 15.98 kB / 385.4 MB, free: 10.27 MB / 314.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007052/0.04173, allocations: 427.3 kB / 385.9 MB, free: 9.855 MB / 314.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001343/0.04307, allocations: 1.331 MB / 387.2 MB, free: 8.48 MB / 314.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.657e-05/0.04312, allocations: 86.64 kB / 387.3 MB, free: 8.395 MB / 314.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001102/0.04323, allocations: 124.4 kB / 387.4 MB, free: 8.273 MB / 314.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001021/0.04425, allocations: 0.8671 MB / 388.3 MB, free: 7.359 MB / 314.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 2.384e-05/0.04427, allocations: 3.938 kB / 388.3 MB, free: 7.355 MB / 314.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.838e-05/0.04434, allocations: 40 kB / 388.3 MB, free: 7.316 MB / 314.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.017e-05/0.04436, allocations: 28 kB / 388.3 MB, free: 7.289 MB / 314.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001057/0.04542, allocations: 479.3 kB / 388.8 MB, free: 6.809 MB / 314.7 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004081/0.0495, allocations: 3.173 MB / 392 MB, free: 3.57 MB / 314.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0006376/0.05014, allocations: 462.1 kB / 392.4 MB, free: 3.094 MB / 314.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.000338/0.05048, allocations: 261.2 kB / 392.7 MB, free: 2.828 MB / 314.7 MB Notification: Performance of preOpt evalFunc (simulation): time 5.108e-05/0.05053, allocations: 20.94 kB / 392.7 MB, free: 2.809 MB / 314.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.208e-05/0.05056, allocations: 46.38 kB / 392.7 MB, free: 2.754 MB / 314.7 MB Notification: Performance of pre-optimization done (n=98): time 2.394e-06/0.05056, allocations: 0 / 392.7 MB, free: 2.754 MB / 314.7 MB Notification: Performance of matching and sorting (n=161): time 0.0211/0.07167, allocations: 7.741 MB / 400.5 MB, free: 10.98 MB / 330.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 4.573e-05/0.07171, allocations: 94.42 kB / 400.6 MB, free: 10.88 MB / 330.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001156/0.07287, allocations: 1.542 MB / 402.1 MB, free: 9.285 MB / 330.7 MB Notification: Performance of collectPreVariables (initialization): time 8.073e-05/0.07295, allocations: 49.7 kB / 402.2 MB, free: 9.23 MB / 330.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0006844/0.07363, allocations: 0.9586 MB / 403.1 MB, free: 8.258 MB / 330.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0003117/0.07394, allocations: 0.5733 MB / 403.7 MB, free: 7.68 MB / 330.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003507/0.07429, allocations: 349 kB / 404 MB, free: 7.328 MB / 330.7 MB Notification: Performance of setup shared object (initialization): time 9.033e-05/0.07438, allocations: 480.7 kB / 404.5 MB, free: 6.855 MB / 330.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005556/0.07494, allocations: 319.8 kB / 404.8 MB, free: 6.543 MB / 330.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007833/0.07572, allocations: 0.8783 MB / 405.7 MB, free: 5.445 MB / 330.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.00144/0.07716, allocations: 1.352 MB / 407.1 MB, free: 3.875 MB / 330.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.37e-06/0.07717, allocations: 4 kB / 407.1 MB, free: 3.871 MB / 330.7 MB Notification: Performance of matching and sorting (n=236) (initialization): time 0.007988/0.08516, allocations: 3.146 MB / 410.2 MB, free: 0.7031 MB / 330.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.169e-05/0.08518, allocations: 8 kB / 410.2 MB, free: 0.6953 MB / 330.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.591e-05/0.08519, allocations: 15.94 kB / 410.2 MB, free: 0.6797 MB / 330.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.1485/0.2337, allocations: 2.973 MB / 413.2 MB, free: 64.57 MB / 330.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006035/0.2343, allocations: 238.8 kB / 413.4 MB, free: 64.57 MB / 330.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.01636/0.2507, allocations: 10.96 MB / 424.4 MB, free: 60.21 MB / 330.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001074/0.2518, allocations: 72.25 kB / 424.5 MB, free: 60.18 MB / 330.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.817e-05/0.2519, allocations: 73.66 kB / 424.5 MB, free: 60.16 MB / 330.7 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 52 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (120): * Single equations (assignments): 118 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 1 system {(3,56,100.0%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(10,49)} Notification: Performance of prepare postOptimizeDAE: time 0.0003638/0.2522, allocations: 259.6 kB / 424.8 MB, free: 59.95 MB / 330.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002536/0.2525, allocations: 276.4 kB / 425.1 MB, free: 59.85 MB / 330.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002859/0.2528, allocations: 332.6 kB / 425.4 MB, free: 59.59 MB / 330.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.092e-05/0.2528, allocations: 17.56 kB / 425.4 MB, free: 59.59 MB / 330.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.795e-05/0.2528, allocations: 9.438 kB / 425.4 MB, free: 59.59 MB / 330.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.908e-06/0.2528, allocations: 6.656 kB / 425.4 MB, free: 59.59 MB / 330.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001331/0.2541, allocations: 1.175 MB / 426.6 MB, free: 59.07 MB / 330.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.562e-06/0.2542, allocations: 5.688 kB / 426.6 MB, free: 59.07 MB / 330.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002381/0.2544, allocations: 94.03 kB / 426.7 MB, free: 59.06 MB / 330.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.01135/0.2657, allocations: 2.821 MB / 429.5 MB, free: 58.62 MB / 330.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001845/0.2659, allocations: 31.48 kB / 429.5 MB, free: 58.6 MB / 330.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01773/0.2837, allocations: 10.86 MB / 440.4 MB, free: 48.24 MB / 330.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.264e-06/0.2837, allocations: 0 / 440.4 MB, free: 48.24 MB / 330.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.01051/0.2942, allocations: 3.379 MB / 443.8 MB, free: 44.9 MB / 330.7 MB Notification: Performance of postOpt removeConstants (simulation): time 0.000872/0.295, allocations: 428.3 kB / 444.2 MB, free: 44.48 MB / 330.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002036/0.2952, allocations: 28 kB / 444.2 MB, free: 44.46 MB / 330.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007937/0.296, allocations: 39.98 kB / 444.3 MB, free: 44.42 MB / 330.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004979/0.2965, allocations: 155 kB / 444.4 MB, free: 44.27 MB / 330.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.37e-05/0.2966, allocations: 39.98 kB / 444.5 MB, free: 44.23 MB / 330.7 MB Notification: Performance of sorting global known variables: time 0.0008366/0.2975, allocations: 0.9163 MB / 445.4 MB, free: 43.29 MB / 330.7 MB Notification: Performance of sort global known variables: time 7e-08/0.2975, allocations: 0 / 445.4 MB, free: 43.29 MB / 330.7 MB Notification: Performance of remove unused functions: time 0.001963/0.2994, allocations: 0.9141 MB / 446.3 MB, free: 42.38 MB / 330.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 1 (hemoglobinConservationLaw.state[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (45): * Single equations (assignments): 43 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 1 system {(6,53,86.1%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(10,49)} Notification: Performance of Backend phase and start with SimCode phase: time 0.0002045/0.2996, allocations: 126 kB / 446.4 MB, free: 42.25 MB / 330.7 MB Notification: Performance of simCode: created initialization part: time 0.00492/0.3045, allocations: 2.396 MB / 448.8 MB, free: 39.86 MB / 330.7 MB Notification: Performance of simCode: created event and clocks part: time 3.517e-06/0.3045, allocations: 6.5 kB / 448.8 MB, free: 39.86 MB / 330.7 MB Notification: Performance of simCode: created simulation system equations: time 0.003831/0.3084, allocations: 1.914 MB / 450.7 MB, free: 37.9 MB / 330.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001532/0.3099, allocations: 347.7 kB / 451.1 MB, free: 37.58 MB / 330.7 MB Error: Error parsing unit kcal/min: Unit not found Error: Error parsing unit kcal: Unit not found Error: Error parsing unit %: Parse error Error: Error parsing unit kcal/mol: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005768/0.3157, allocations: 3.393 MB / 454.5 MB, free: 34.19 MB / 330.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004426/0.3161, allocations: 0.4959 MB / 455 MB, free: 33.66 MB / 330.7 MB Notification: Performance of simCode: alias equations: time 0.0004621/0.3166, allocations: 150.8 kB / 455.1 MB, free: 33.52 MB / 330.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001778/0.3168, allocations: 88.48 kB / 455.2 MB, free: 33.43 MB / 330.7 MB Notification: Performance of SimCode: time 1.934e-06/0.3168, allocations: 0 / 455.2 MB, free: 33.43 MB / 330.7 MB Notification: Performance of Templates: time 0.08169/0.3984, allocations: 72.39 MB / 0.5152 GB, free: 9.238 MB / 378.7 MB " [Timeout remaining time 660] make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.makefile [Timeout 660] (rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC -abortSlowSimulation -alarm=240 -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe 2>&1) [Timeout 240] [Calling os._exit(0), Time elapsed: 5.107068278826773]