Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001368/0.001368, allocations: 97.88 kB / 19.73 MB, free: 2.117 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001496/0.001496, allocations: 217.8 kB / 23.03 MB, free: 4.922 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.473/1.473, allocations: 230.6 MB / 256.8 MB, free: 7.797 MB / 206.1 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.142/0.142, allocations: 23.91 MB / 337.1 MB, free: 10.94 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) [Timeout 660] Thread is still alive. "Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.002234/0.002234, allocations: 67.91 kB / 471.9 MB, free: 7.48 MB / 334.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.3437/0.3459, allocations: 59.86 MB / 0.5193 GB, free: 9.543 MB / 382.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1287/0.4746, allocations: 73.98 MB / 0.5916 GB, free: 15.81 MB / 446.1 MB Notification: Performance of NFInst.instExpressions: time 0.5668/1.041, allocations: 191.1 MB / 0.7782 GB, free: 15.97 MB / 0.5606 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0144/1.056, allocations: 232.3 kB / 0.7784 GB, free: 15.97 MB / 0.5606 GB Notification: Performance of NFTyping.typeComponents: time 0.01452/1.07, allocations: 4.452 MB / 0.7828 GB, free: 15.94 MB / 0.5606 GB Notification: Performance of NFTyping.typeBindings: time 0.05511/1.125, allocations: 17.87 MB / 0.8002 GB, free: 15.46 MB / 0.5606 GB Notification: Performance of NFTyping.typeClassSections: time 0.07879/1.204, allocations: 32.66 MB / 0.8321 GB, free: 20 kB / 0.5606 GB Notification: Performance of NFFlatten.flatten: time 0.1003/1.305, allocations: 89.12 MB / 0.9191 GB, free: 2.234 MB / 0.6387 GB Notification: Performance of NFFlatten.resolveConnections: time 0.09535/1.4, allocations: 52.27 MB / 0.9702 GB, free: 15.83 MB / 0.7012 GB Notification: Performance of NFEvalConstants.evaluate: time 0.7827/2.183, allocations: 56.57 MB / 1.025 GB, free: 44.11 MB / 0.7169 GB Notification: Performance of NFSimplifyModel.simplify: time 0.08588/2.268, allocations: 52.03 MB / 1.076 GB, free: 41.28 MB / 0.7169 GB Notification: Performance of NFPackage.collectConstants: time 0.03467/2.303, allocations: 12.2 MB / 1.088 GB, free: 41.28 MB / 0.7169 GB Notification: Performance of NFFlatten.collectFunctions: time 0.1124/2.416, allocations: 34.51 MB / 1.122 GB, free: 32.64 MB / 0.7169 GB Notification: Performance of NFScalarize.scalarize: time 0.0451/2.461, allocations: 24.02 MB / 1.145 GB, free: 13.09 MB / 0.7169 GB Notification: Performance of NFVerifyModel.verify: time 0.1245/2.585, allocations: 39.02 MB / 1.183 GB, free: 12.8 MB / 0.7325 GB Notification: Performance of NFConvertDAE.convert: time 0.9739/3.559, allocations: 159.6 MB / 1.339 GB, free: 108.5 MB / 0.842 GB Notification: Performance of FrontEnd - DAE generated: time 5.611e-06/3.559, allocations: 0 / 1.339 GB, free: 108.5 MB / 0.842 GB Notification: Performance of FrontEnd: time 1.723e-06/3.559, allocations: 0 / 1.339 GB, free: 108.5 MB / 0.842 GB Notification: Performance of Transformations before backend: time 0.003326/3.562, allocations: 2 kB / 1.339 GB, free: 108.5 MB / 0.842 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 11424 * Number of variables: 11424 Notification: Performance of Generate backend data structure: time 0.2795/3.842, allocations: 71.67 MB / 1.409 GB, free: 88.04 MB / 0.842 GB Notification: Performance of prepare preOptimizeDAE: time 4.805e-05/3.842, allocations: 11.66 kB / 1.409 GB, free: 88.04 MB / 0.842 GB Notification: Performance of preOpt introduceOutputRealDerivatives (simulation): time 0.001106/3.843, allocations: 1.135 MB / 1.41 GB, free: 87.95 MB / 0.842 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0377/3.881, allocations: 5.956 MB / 1.416 GB, free: 87.62 MB / 0.842 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08467/3.965, allocations: 11.94 MB / 1.428 GB, free: 84.56 MB / 0.842 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.09911/4.065, allocations: 42.62 MB / 1.47 GB, free: 73.32 MB / 0.842 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005669/4.07, allocations: 9.238 MB / 1.479 GB, free: 64.81 MB / 0.842 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.03353/4.104, allocations: 4.597 MB / 1.483 GB, free: 60.99 MB / 0.842 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.3144/4.418, allocations: 112.9 MB / 1.593 GB, free: 11.43 MB / 0.9045 GB Notification: Performance of preOpt findStateOrder (simulation): time 0.002413/4.421, allocations: 27.84 kB / 1.593 GB, free: 11.42 MB / 0.9045 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03553/4.456, allocations: 1.758 MB / 1.595 GB, free: 9.664 MB / 0.9045 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001112/4.457, allocations: 1.06 MB / 1.596 GB, free: 8.605 MB / 0.9045 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.6326/5.09, allocations: 153.9 MB / 1.746 GB, free: 350.7 MB / 0.9514 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.336/6.426, allocations: 394.7 MB / 2.132 GB, free: 322.9 MB / 0.9514 GB Notification: Performance of preOpt comSubExp (simulation): time 2.248/8.674, allocations: 0.6474 GB / 2.779 GB, free: 248.5 MB / 0.9514 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.1066/8.78, allocations: 60.06 MB / 2.838 GB, free: 193.2 MB / 0.9514 GB Notification: Performance of preOpt evalFunc (simulation): time 1.005/9.785, allocations: 254.8 MB / 3.087 GB, free: 320.3 MB / 0.9514 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003089/9.785, allocations: 336.3 kB / 3.087 GB, free: 320.2 MB / 0.9514 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.104/9.89, allocations: 29.34 MB / 3.116 GB, free: 313.3 MB / 0.9514 GB Notification: Performance of pre-optimization done (n=2985): time 0.0002218/9.89, allocations: 1.5 kB / 3.116 GB, free: 313.3 MB / 0.9514 GB Notification: Performance of matching and sorting (n=3387): time 2.457/12.35, allocations: 423.8 MB / 3.53 GB, free: 313.6 MB / 0.9514 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002763/12.35, allocations: 450.4 kB / 3.53 GB, free: 313.5 MB / 0.9514 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0712/12.42, allocations: 32.26 MB / 3.561 GB, free: 302.4 MB / 0.9514 GB Notification: Performance of collectPreVariables (initialization): time 0.01938/12.44, allocations: 0.5675 MB / 3.562 GB, free: 302 MB / 0.9514 GB Notification: Performance of collectInitialEqns (initialization): time 0.02062/12.46, allocations: 21.73 MB / 3.583 GB, free: 289.8 MB / 0.9514 GB Notification: Performance of collectInitialBindings (initialization): time 0.02599/12.48, allocations: 12.42 MB / 3.595 GB, free: 280.1 MB / 0.9514 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.05843/12.54, allocations: 9.924 MB / 3.605 GB, free: 276.3 MB / 0.9514 GB Notification: Performance of setup shared object (initialization): time 6.13e-05/12.54, allocations: 308.7 kB / 3.605 GB, free: 276 MB / 0.9514 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.07685/12.62, allocations: 39.04 MB / 3.644 GB, free: 255.2 MB / 0.9514 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.08709/12.71, allocations: 53.24 MB / 3.696 GB, free: 207.6 MB / 0.9514 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.1688/12.88, allocations: 96.37 MB / 3.79 GB, free: 104.8 MB / 0.9514 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0008754/12.88, allocations: 128 kB / 3.79 GB, free: 104.7 MB / 0.9514 GB Notification: Performance of matching and sorting (n=5667) (initialization): time 1.765/14.64, allocations: 257.3 MB / 4.041 GB, free: 238.4 MB / 0.9514 GB Notification: Performance of prepare postOptimizeDAE: time 0.001005/14.64, allocations: 195.7 kB / 4.041 GB, free: 238.4 MB / 0.9514 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.001163/14.64, allocations: 448.5 kB / 4.042 GB, free: 238.4 MB / 0.9514 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.1766/14.82, allocations: 73.7 MB / 4.114 GB, free: 183.9 MB / 0.9514 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.04958/14.87, allocations: 11.18 MB / 4.125 GB, free: 173.5 MB / 0.9514 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.9859/15.86, allocations: 309.9 MB / 4.427 GB, free: 230.3 MB / 0.9514 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05645/15.91, allocations: 2.477 MB / 4.43 GB, free: 229.6 MB / 0.9514 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01789/15.93, allocations: 2.798 MB / 4.432 GB, free: 229.3 MB / 0.9514 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 2031 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (5523): * Single equations (assignments): 5514 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 9 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 6 systems {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 3 systems {(1,3), (1,3), (1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.05814/15.99, allocations: 18.34 MB / 4.45 GB, free: 221.2 MB / 0.9514 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02346/16.01, allocations: 3.319 MB / 4.453 GB, free: 221.2 MB / 0.9514 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.8208/16.83, allocations: 152.5 MB / 4.602 GB, free: 97.87 MB / 0.9514 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003082/16.83, allocations: 360 kB / 4.603 GB, free: 97.52 MB / 0.9514 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004046/16.83, allocations: 56 kB / 4.603 GB, free: 97.46 MB / 0.9514 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009896/16.83, allocations: 179.3 kB / 4.603 GB, free: 97.29 MB / 0.9514 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.327/18.16, allocations: 228.7 MB / 4.826 GB, free: 235.1 MB / 0.9514 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003264/18.16, allocations: 11.91 kB / 4.826 GB, free: 235.1 MB / 0.9514 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04133/18.2, allocations: 7.25 MB / 4.833 GB, free: 234.4 MB / 0.9514 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.09612/18.3, allocations: 39.74 MB / 4.872 GB, free: 225.8 MB / 0.9514 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01135/18.31, allocations: 1.445 MB / 4.874 GB, free: 225.2 MB / 0.9514 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3273/18.64, allocations: 155.9 MB / 5.026 GB, free: 79.12 MB / 0.9514 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.883e-06/18.64, allocations: 15.94 kB / 5.026 GB, free: 79.1 MB / 0.9514 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 1.25/19.89, allocations: 200.4 MB / 5.222 GB, free: 231.7 MB / 0.9514 GB Notification: Performance of postOpt removeConstants (simulation): time 0.03276/19.92, allocations: 11.55 MB / 5.233 GB, free: 227.9 MB / 0.9514 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01705/19.94, allocations: 0.9184 MB / 5.234 GB, free: 227.3 MB / 0.9514 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03965/19.98, allocations: 1.552 MB / 5.235 GB, free: 226.8 MB / 0.9514 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0244/20, allocations: 4.679 MB / 5.24 GB, free: 226.1 MB / 0.9514 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01079/20.01, allocations: 1.382 MB / 5.241 GB, free: 225.9 MB / 0.9514 GB Notification: Performance of sorting global known variables: time 0.04151/20.05, allocations: 22.47 MB / 5.263 GB, free: 217.6 MB / 0.9514 GB Notification: Performance of sort global known variables: time 1.71e-07/20.05, allocations: 3.969 kB / 5.263 GB, free: 217.6 MB / 0.9514 GB Notification: Performance of remove unused functions: time 0.08949/20.14, allocations: 20.25 MB / 5.283 GB, free: 214.4 MB / 0.9514 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 45 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (3702): * Single equations (assignments): 3693 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 9 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 6 systems {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 3 systems {(1,3), (1,3), (1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.9053/21.05, allocations: 211.9 MB / 5.49 GB, free: 26.18 MB / 0.9514 GB Notification: Performance of simCode: created initialization part: time 0.5436/21.59, allocations: 85.29 MB / 5.573 GB, free: 320.4 MB / 0.9514 GB Notification: Performance of simCode: created event and clocks part: time 1.58e-05/21.59, allocations: 2.281 kB / 5.573 GB, free: 320.4 MB / 0.9514 GB Notification: Performance of simCode: created simulation system equations: time 0.1322/21.72, allocations: 54.54 MB / 5.626 GB, free: 299.7 MB / 0.9514 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06164/21.79, allocations: 7.835 MB / 5.634 GB, free: 296.7 MB / 0.9514 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 4/25.79, allocations: 0.8502 GB / 6.484 GB, free: 252.7 MB / 0.9514 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.05538/25.84, allocations: 30.57 MB / 6.514 GB, free: 250.3 MB / 0.9514 GB Notification: Performance of simCode: alias equations: time 0.05627/25.9, allocations: 15.63 MB / 6.529 GB, free: 248.8 MB / 0.9514 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.05223/25.95, allocations: 22.83 MB / 6.552 GB, free: 245.1 MB / 0.9514 GB Notification: Performance of SimCode: time 1.653e-06/25.95, allocations: 0 / 6.552 GB, free: 245.1 MB / 0.9514 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 2.746/28.7, allocations: 1.436 GB / 7.988 GB, free: 38.51 MB / 0.9514 GB Error: Error building simulator. Build log: cmd: cd '921.fmutmp/sources/' && mkdir build_cmake_static && cd build_cmake_static && cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='clang' .. && cmake --build . --parallel -j1 --target install && cd .. && rm -rf build_cmake_static -- The C compiler identification is Clang 14.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- FMI2 include directory: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/fmi -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Building for FMI platform linux64 -- Install directory: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/../binaries/linux64 -- CVODE_DIRECTORY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../lib/x86_64-linux-gnu/omc -- SUNDIALS_CVODE_LIBRARY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so -- SUNDIALS_NVECSERIAL_LIBRARY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so -- CVODE: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so -- Not using FMI2_FUNCTION_PREFIX -- Installing dynamic dependencies from list: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so;/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so -- Configuring done -- Generating done -- Build files have been written to: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/build_cmake_static [ 0%] Building C object CMakeFiles/921.dir/external_solvers/F77_aloc.c.o [ 1%] Building C object CMakeFiles/921.dir/external_solvers/dgemm.c.o [ 2%] Building C object CMakeFiles/921.dir/external_solvers/dgemv.c.o [ 2%] Building C object CMakeFiles/921.dir/external_solvers/dger.c.o [ 3%] Building C object CMakeFiles/921.dir/external_solvers/dgesv.c.o [ 4%] Building C object CMakeFiles/921.dir/external_solvers/dgetf2.c.o [ 5%] Building C object 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Building C object CMakeFiles/921.dir/simulation/solver/delay.c.o [ 36%] Building C object CMakeFiles/921.dir/simulation/solver/fmi_events.c.o [ 37%] Building C object CMakeFiles/921.dir/simulation/solver/initialization/initialization.c.o [ 38%] Building C object CMakeFiles/921.dir/simulation/solver/linearSolverLapack.c.o [ 38%] Building C object CMakeFiles/921.dir/simulation/solver/linearSolverTotalPivot.c.o [ 39%] Building C object CMakeFiles/921.dir/simulation/solver/linearSystem.c.o [ 40%] Building C object CMakeFiles/921.dir/simulation/solver/model_help.c.o [ 41%] Building C object CMakeFiles/921.dir/simulation/solver/nonlinearSolverHomotopy.c.o [ 41%] Building C object CMakeFiles/921.dir/simulation/solver/nonlinearSolverHybrd.c.o [ 42%] Building C object CMakeFiles/921.dir/simulation/solver/nonlinearSystem.c.o [ 43%] Building C object CMakeFiles/921.dir/simulation/solver/nonlinearValuesList.c.o [ 44%] Building C object CMakeFiles/921.dir/simulation/solver/omc_math.c.o [ 44%] Building C object CMakeFiles/921.dir/simulation/solver/spatialDistribution.c.o [ 45%] Building C object CMakeFiles/921.dir/simulation/solver/stateset.c.o /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/simulation/solver/stateset.c:349:70: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] warningStreamPrint(OMC_LOG_DSS, 1, \"jacobian %dx%d [id: %ld]\", data->simulationInfo->analyticJacobians[set->jacobianIndex].sizeRows, data->simulationInfo->analyticJacobians[set->jacobianIndex].sizeCols, set->jacobianIndex); ~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %zu /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/simulation/solver/stateset.c:349:140: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] warningStreamPrint(OMC_LOG_DSS, 1, \"jacobian %dx%d [id: %ld]\", data->simulationInfo->analyticJacobians[set->jacobianIndex].sizeRows, data->simulationInfo->analyticJacobians[set->jacobianIndex].sizeCols, set->jacobianIndex); ~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %zu 2 warnings generated. 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CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_06inz_part8.c.o [ 80%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_06inz_part9.c.o [ 80%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_07dly.c.o [ 81%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd.c.o [ 82%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part12.c.o [ 83%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part13.c.o [ 83%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part14.c.o [ 84%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part15.c.o [ 85%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part16.c.o [ 86%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part17.c.o [ 86%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part18.c.o [ 87%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part19.c.o [ 88%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part20.c.o [ 88%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part21.c.o [ 89%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_09alg.c.o [ 90%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_10asr.c.o [ 91%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_11mix.c.o [ 91%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_12jac.c.o [ 92%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_13opt.c.o [ 93%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_14lnz.c.o /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_14lnz.c:7:88: warning: non-void function does not return a value [-Wreturn-type] { /* system too big, use compiler flag `--maxSizeLinearization` to change threshold */ } ^ /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/921.fmutmp/sources/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_14lnz.c:9:88: warning: non-void function does not return a value [-Wreturn-type] { /* system too big, use compiler flag `--maxSizeLinearization` to change threshold */ } ^ 2 warnings generated. [ 94%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_15syn.c.o [ 94%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_16dae.c.o [ 95%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_17inl.c.o [ 96%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_18spd.c.o [ 97%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_FMU.c.o [ 97%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_functions.c.o [ 98%] Building C object CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_init_fmu.c.o gmake[2]: *** [CMakeFiles/921.dir/build.make:1938: CMakeFiles/921.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_init_fmu.c.o] Interrupt gmake[1]: *** [CMakeFiles/Makefile2:84: CMakeFiles/921.dir/all] Interrupt gmake: *** [Makefile:136: all] Interrupt " [Timeout remaining time 0] Timeout error for cmd: "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) Failed to read output from testmodel.py, exit status != 0: Traceback (most recent call last): File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 410, in res=sendExpressionTimeout(omc, cmd, conf["ulimitOmc"]) File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 144, in sendExpressionTimeout raise TimeoutError(res[1]) __main__.TimeoutError During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 424, in writeResultAndExit(0, omc, omc_new) NameError: name 'omc' is not defined