Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001182/0.001182, allocations: 85.27 kB / 19.87 MB, free: 4.613 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001204/0.001204, allocations: 165.4 kB / 23.27 MB, free: 1.219 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.002/1.002, allocations: 177.1 MB / 203.7 MB, free: 5.527 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.596/1.596, allocations: 273.5 MB / 0.5212 GB, free: 14.6 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.312e-06/1.312e-06, allocations: 0 / 0.6475 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.983e-05/2.114e-05, allocations: 2.312 kB / 0.6475 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.006996/0.007017, allocations: 11.54 MB / 0.6588 GB, free: 30.75 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002473/0.00949, allocations: 2.49 MB / 0.6612 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003896/0.009879, allocations: 21.09 kB / 0.6612 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003567/0.01024, allocations: 297.5 kB / 0.6615 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0007895/0.01103, allocations: 0.7837 MB / 0.6623 GB, free: 28.27 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006342/0.01166, allocations: 0.5922 MB / 0.6628 GB, free: 27.92 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001334/0.01299, allocations: 2.874 MB / 0.6656 GB, free: 26.37 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.001749/0.01474, allocations: 3.218 MB / 0.6688 GB, free: 24.46 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00158/0.01632, allocations: 2.563 MB / 0.6713 GB, free: 23.39 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002184/0.01851, allocations: 1.983 MB / 0.6732 GB, free: 22.88 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003917/0.0189, allocations: 423.2 kB / 0.6736 GB, free: 22.88 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004948/0.01939, allocations: 425.2 kB / 0.674 GB, free: 22.88 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0004752/0.01987, allocations: 0.9243 MB / 0.6749 GB, free: 22.28 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0009106/0.02078, allocations: 1.294 MB / 0.6762 GB, free: 21.67 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001896/0.02268, allocations: 2.594 MB / 0.6787 GB, free: 20.4 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.399e-06/0.02268, allocations: 0.7031 kB / 0.6787 GB, free: 20.4 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.92e-07/0.02268, allocations: 0 / 0.6787 GB, free: 20.4 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.902e-05/0.0227, allocations: 0 / 0.6787 GB, free: 20.4 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.003653/0.02635, allocations: 2.914 MB / 0.6816 GB, free: 18.24 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.023e-05/0.02638, allocations: 9.812 kB / 0.6816 GB, free: 18.24 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000594/0.02698, allocations: 372.8 kB / 0.6819 GB, free: 18.07 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009618/0.02794, allocations: 1.07 MB / 0.683 GB, free: 17.2 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.183e-05/0.02801, allocations: 141.1 kB / 0.6831 GB, free: 17.13 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002978/0.02831, allocations: 208.1 kB / 0.6833 GB, free: 17.06 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002425/0.03073, allocations: 2.804 MB / 0.6861 GB, free: 15.25 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.748e-05/0.03078, allocations: 12.53 kB / 0.6861 GB, free: 15.24 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002149/0.031, allocations: 73.22 kB / 0.6861 GB, free: 15.18 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.875e-05/0.03103, allocations: 42.28 kB / 0.6862 GB, free: 15.18 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001762/0.03279, allocations: 1.69 MB / 0.6878 GB, free: 14.59 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008079/0.04087, allocations: 6.949 MB / 0.6946 GB, free: 8.508 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001055/0.04192, allocations: 0.9831 MB / 0.6956 GB, free: 7.504 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006873/0.04261, allocations: 0.6484 MB / 0.6962 GB, free: 6.828 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.059e-05/0.04267, allocations: 37.98 kB / 0.6963 GB, free: 6.793 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0011/0.04377, allocations: 1.486 MB / 0.6977 GB, free: 5.211 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003616/0.04738, allocations: 1.856 MB / 0.6995 GB, free: 3.395 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.597e-06/0.04739, allocations: 0 / 0.6995 GB, free: 3.395 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.006255/0.05364, allocations: 4.821 MB / 0.7042 GB, free: 14.44 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001313/0.05377, allocations: 405.8 kB / 0.7046 GB, free: 13.96 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000569/0.05434, allocations: 0.8457 MB / 0.7054 GB, free: 13.09 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001676/0.05451, allocations: 69.7 kB / 0.7055 GB, free: 13.01 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003546/0.05487, allocations: 0.7545 MB / 0.7062 GB, free: 12.25 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004957/0.05536, allocations: 0.732 MB / 0.707 GB, free: 11.51 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007936/0.05616, allocations: 0.6031 MB / 0.7075 GB, free: 10.89 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001253/0.05628, allocations: 476.8 kB / 0.708 GB, free: 10.43 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001089/0.05737, allocations: 0.8705 MB / 0.7088 GB, free: 9.496 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001299/0.05867, allocations: 1.538 MB / 0.7103 GB, free: 7.609 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003164/0.06183, allocations: 3.069 MB / 0.7133 GB, free: 4.176 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.256e-05/0.06185, allocations: 4 kB / 0.7133 GB, free: 4.172 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.003764/0.06561, allocations: 2.806 MB / 0.7161 GB, free: 1.246 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001247/0.06573, allocations: 271.2 kB / 0.7163 GB, free: 0.9258 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.867e-05/0.06575, allocations: 12 kB / 0.7164 GB, free: 0.9141 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.771e-05/0.06578, allocations: 24.75 kB / 0.7164 GB, free: 0.8906 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00212/0.0679, allocations: 0.8344 MB / 0.7172 GB, free: 56 kB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.343e-05/0.06792, allocations: 31.92 kB / 0.7172 GB, free: 24 kB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001461/0.06938, allocations: 95.95 kB / 0.7173 GB, free: 15.93 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003038/0.06969, allocations: 191.7 kB / 0.7175 GB, free: 15.74 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0009498/0.07064, allocations: 0.5755 MB / 0.7181 GB, free: 15.16 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004945/0.07113, allocations: 227.1 kB / 0.7183 GB, free: 14.94 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003328/0.07446, allocations: 2.54 MB / 0.7208 GB, free: 12.41 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.381e-05/0.07447, allocations: 20 kB / 0.7208 GB, free: 12.39 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.666e-06/0.07448, allocations: 3.984 kB / 0.7208 GB, free: 12.39 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.318e-05/0.07449, allocations: 7.969 kB / 0.7208 GB, free: 12.38 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004428/0.07892, allocations: 3.316 MB / 0.724 GB, free: 8.973 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.03e-06/0.07892, allocations: 0 / 0.724 GB, free: 8.973 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001465/0.08039, allocations: 439.2 kB / 0.7244 GB, free: 8.543 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.371e-05/0.0804, allocations: 8 kB / 0.7245 GB, free: 8.535 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001562/0.08056, allocations: 107.8 kB / 0.7246 GB, free: 8.43 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.045e-06/0.08057, allocations: 11.38 kB / 0.7246 GB, free: 8.422 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.653e-06/0.08057, allocations: 0 / 0.7246 GB, free: 8.422 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003355/0.08392, allocations: 2.824 MB / 0.7273 GB, free: 5.496 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.000696/0.08462, allocations: 402 kB / 0.7277 GB, free: 5.105 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002642/0.08488, allocations: 59.89 kB / 0.7278 GB, free: 5.047 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008529/0.08574, allocations: 75.89 kB / 0.7278 GB, free: 4.973 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002339/0.08597, allocations: 169.6 kB / 0.728 GB, free: 4.805 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002124/0.08618, allocations: 99.84 kB / 0.7281 GB, free: 4.707 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0004575/0.08664, allocations: 0.5371 MB / 0.7286 GB, free: 4.16 MB / 0.5574 GB Notification: Performance of sort global known variables: time 7e-08/0.08664, allocations: 0 / 0.7286 GB, free: 4.16 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001538/0.08818, allocations: 0.6367 MB / 0.7292 GB, free: 3.523 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002668/0.08845, allocations: 196.2 kB / 0.7294 GB, free: 3.324 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002587/0.09103, allocations: 2.474 MB / 0.7318 GB, free: 0.6562 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 2.965e-06/0.09104, allocations: 0 / 0.7318 GB, free: 0.6562 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001055/0.09209, allocations: 1.108 MB / 0.7329 GB, free: 15.47 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001647/0.09374, allocations: 0.577 MB / 0.7335 GB, free: 14.93 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006286/0.1, allocations: 5.066 MB / 0.7384 GB, free: 9.961 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002296/0.1003, allocations: 333.7 kB / 0.7388 GB, free: 9.609 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001773/0.102, allocations: 0.4904 MB / 0.7392 GB, free: 9.246 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001936/0.104, allocations: 0.7825 MB / 0.74 GB, free: 8.461 MB / 0.573 GB Notification: Performance of SimCode: time 1.573e-06/0.104, allocations: 0 / 0.74 GB, free: 8.461 MB / 0.573 GB Notification: Performance of Templates: time 0.04831/0.1523, allocations: 43.89 MB / 0.7829 GB, free: 13.61 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_ida.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.474292525090277]