Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001028/0.001028, allocations: 86.05 kB / 19.87 MB, free: 4.617 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009989/0.0009989, allocations: 169.7 kB / 23.27 MB, free: 1.223 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9382/0.9382, allocations: 177.1 MB / 203.7 MB, free: 5.492 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.478/1.478, allocations: 273.5 MB / 0.5212 GB, free: 14.68 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.072e-06/1.072e-06, allocations: 0 / 0.6474 GB, free: 38.5 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 9.598e-06/1.067e-05, allocations: 5.844 kB / 0.6474 GB, free: 38.49 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.004185/0.004196, allocations: 6.584 MB / 0.6538 GB, free: 34.21 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002293/0.006488, allocations: 1.985 MB / 0.6558 GB, free: 32.85 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003452/0.006833, allocations: 13.22 kB / 0.6558 GB, free: 32.85 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005272/0.007361, allocations: 295.1 kB / 0.6561 GB, free: 32.7 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0005651/0.007926, allocations: 466.7 kB / 0.6565 GB, free: 32.38 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007311/0.008657, allocations: 0.538 MB / 0.657 GB, free: 32.04 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001182/0.009839, allocations: 1.801 MB / 0.6588 GB, free: 31.03 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003161/0.01015, allocations: 267.2 kB / 0.6591 GB, free: 30.87 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00071/0.01086, allocations: 0.9124 MB / 0.6599 GB, free: 30.43 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0005121/0.01138, allocations: 0.5258 MB / 0.6605 GB, free: 30.24 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001761/0.01155, allocations: 168 kB / 0.6606 GB, free: 30.24 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003651/0.01192, allocations: 318.3 kB / 0.6609 GB, free: 30.18 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001777/0.0121, allocations: 366.9 kB / 0.6613 GB, free: 29.95 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003687/0.01246, allocations: 0.5203 MB / 0.6618 GB, free: 29.69 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0009664/0.01343, allocations: 1.378 MB / 0.6631 GB, free: 28.95 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.685e-06/0.01343, allocations: 0 / 0.6631 GB, free: 28.95 MB / 0.5262 GB Notification: Performance of FrontEnd: time 7.01e-07/0.01343, allocations: 0 / 0.6631 GB, free: 28.95 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.855e-05/0.01346, allocations: 0 / 0.6631 GB, free: 28.95 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.001767/0.01523, allocations: 2.351 MB / 0.6654 GB, free: 27.08 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 2.753e-05/0.01526, allocations: 9.812 kB / 0.6654 GB, free: 27.08 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006938/0.01595, allocations: 0.517 MB / 0.6659 GB, free: 26.88 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005483/0.0165, allocations: 0.6618 MB / 0.6666 GB, free: 26.38 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.831e-05/0.01654, allocations: 68.69 kB / 0.6667 GB, free: 26.35 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001099/0.01665, allocations: 117.4 kB / 0.6668 GB, free: 26.31 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008702/0.01752, allocations: 1.199 MB / 0.6679 GB, free: 25.52 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.84e-05/0.01756, allocations: 23.62 kB / 0.668 GB, free: 25.51 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.45e-05/0.01761, allocations: 36.72 kB / 0.668 GB, free: 25.48 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.479e-05/0.01763, allocations: 21.25 kB / 0.668 GB, free: 25.48 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005903/0.01822, allocations: 0.8691 MB / 0.6689 GB, free: 24.92 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002011/0.02023, allocations: 2.418 MB / 0.6712 GB, free: 23.32 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0007574/0.02098, allocations: 1.078 MB / 0.6723 GB, free: 22.51 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003411/0.02133, allocations: 0.7099 MB / 0.673 GB, free: 21.9 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 4.303e-05/0.02137, allocations: 20.78 kB / 0.673 GB, free: 21.9 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0007581/0.02213, allocations: 1.581 MB / 0.6745 GB, free: 20.61 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 2.926e-06/0.02213, allocations: 0 / 0.6745 GB, free: 20.61 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.003627/0.02576, allocations: 5.266 MB / 0.6797 GB, free: 16.7 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001383/0.02589, allocations: 1.035 MB / 0.6807 GB, free: 15.48 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006708/0.02657, allocations: 0.9112 MB / 0.6816 GB, free: 15.04 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 6.893e-05/0.02663, allocations: 76.75 kB / 0.6816 GB, free: 14.98 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002812/0.02692, allocations: 0.5895 MB / 0.6822 GB, free: 14.51 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002466/0.02716, allocations: 0.5278 MB / 0.6827 GB, free: 14.09 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002825/0.02744, allocations: 296.3 kB / 0.683 GB, free: 13.95 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 2.994e-05/0.02747, allocations: 482.3 kB / 0.6835 GB, free: 13.47 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00041/0.02788, allocations: 0.8449 MB / 0.6843 GB, free: 12.75 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005392/0.02842, allocations: 1.345 MB / 0.6856 GB, free: 11.37 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001209/0.02963, allocations: 2.745 MB / 0.6883 GB, free: 8.781 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.199e-05/0.02964, allocations: 6.812 kB / 0.6883 GB, free: 8.781 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.001753/0.0314, allocations: 2.57 MB / 0.6908 GB, free: 7.016 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001155/0.03151, allocations: 0.5714 MB / 0.6914 GB, free: 6.367 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.465e-05/0.03153, allocations: 9.5 kB / 0.6914 GB, free: 6.367 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.667e-05/0.03155, allocations: 16.75 kB / 0.6914 GB, free: 6.367 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006747/0.03223, allocations: 342.4 kB / 0.6917 GB, free: 6.328 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.064e-05/0.03225, allocations: 23.73 kB / 0.6918 GB, free: 6.324 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004137/0.03266, allocations: 76.28 kB / 0.6918 GB, free: 6.301 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002265/0.03289, allocations: 228.5 kB / 0.692 GB, free: 6.285 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005487/0.03344, allocations: 0.9338 MB / 0.693 GB, free: 5.441 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004439/0.03388, allocations: 450.4 kB / 0.6934 GB, free: 5.27 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001458/0.03403, allocations: 139.4 kB / 0.6935 GB, free: 5.18 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.127e-06/0.03404, allocations: 17.31 kB / 0.6935 GB, free: 5.176 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.464e-05/0.03405, allocations: 2.891 kB / 0.6935 GB, free: 5.176 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.335e-05/0.03407, allocations: 7.219 kB / 0.6935 GB, free: 5.176 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002745/0.03681, allocations: 3.588 MB / 0.697 GB, free: 2.77 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.148e-06/0.03681, allocations: 1.281 kB / 0.697 GB, free: 2.77 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006035/0.03742, allocations: 229.5 kB / 0.6973 GB, free: 2.727 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.093e-06/0.03743, allocations: 5.531 kB / 0.6973 GB, free: 2.727 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.367e-05/0.03751, allocations: 68.81 kB / 0.6973 GB, free: 2.684 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.14e-06/0.03751, allocations: 11.19 kB / 0.6973 GB, free: 2.676 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.633e-06/0.03752, allocations: 3.938 kB / 0.6974 GB, free: 2.672 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00216/0.03968, allocations: 3.758 MB / 0.701 GB, free: 14.59 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003626/0.04004, allocations: 290.9 kB / 0.7013 GB, free: 14.31 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001607/0.0402, allocations: 71.98 kB / 0.7014 GB, free: 14.24 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003737/0.04057, allocations: 63.97 kB / 0.7014 GB, free: 14.18 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002035/0.04078, allocations: 147.7 kB / 0.7016 GB, free: 14.03 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001922/0.04097, allocations: 227.1 kB / 0.7018 GB, free: 13.81 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0003984/0.04137, allocations: 0.5085 MB / 0.7023 GB, free: 13.29 MB / 0.5418 GB Notification: Performance of sort global known variables: time 7e-08/0.04137, allocations: 0 / 0.7023 GB, free: 13.29 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.0007589/0.04213, allocations: 383.9 kB / 0.7026 GB, free: 12.92 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002949/0.04242, allocations: 286.2 kB / 0.7029 GB, free: 12.64 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.001639/0.04406, allocations: 2.973 MB / 0.7058 GB, free: 9.203 MB / 0.5418 GB Notification: Performance of simCode: created event and clocks part: time 1.163e-06/0.04406, allocations: 0 / 0.7058 GB, free: 9.203 MB / 0.5418 GB Notification: Performance of simCode: created simulation system equations: time 0.0008493/0.04491, allocations: 1.808 MB / 0.7076 GB, free: 7.094 MB / 0.5418 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001041/0.04595, allocations: 402.5 kB / 0.708 GB, free: 6.738 MB / 0.5418 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003978/0.04993, allocations: 3.836 MB / 0.7117 GB, free: 2.844 MB / 0.5418 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002248/0.05015, allocations: 310.5 kB / 0.712 GB, free: 2.516 MB / 0.5418 GB Notification: Performance of simCode: alias equations: time 0.0003335/0.05049, allocations: 118.7 kB / 0.7121 GB, free: 2.402 MB / 0.5418 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007561/0.05124, allocations: 0.498 MB / 0.7126 GB, free: 1.902 MB / 0.5418 GB Notification: Performance of SimCode: time 4.81e-07/0.05124, allocations: 0 / 0.7126 GB, free: 1.902 MB / 0.5418 GB Notification: Performance of Templates: time 0.02599/0.07724, allocations: 25.47 MB / 0.7375 GB, free: 9.746 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_ida.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.759098413866013]