Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008789/0.0008789, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009646/0.0009646, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.934/0.934, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.517/1.517, allocations: 273.5 MB / 0.5212 GB, free: 14.68 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI")
translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.593e-06/1.593e-06, allocations: 0 / 0.6474 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.279e-05/1.439e-05, allocations: 2.312 kB / 0.6474 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.004265/0.004279, allocations: 6.769 MB / 0.654 GB, free: 34.12 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001321/0.005601, allocations: 1.285 MB / 0.6553 GB, free: 33.22 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001913/0.005792, allocations: 8.094 kB / 0.6553 GB, free: 33.22 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001908/0.005983, allocations: 111.5 kB / 0.6554 GB, free: 33.16 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0003727/0.006355, allocations: 346.3 kB / 0.6557 GB, free: 32.91 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003697/0.006725, allocations: 284.9 kB / 0.656 GB, free: 32.72 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.000877/0.007602, allocations: 1.223 MB / 0.6572 GB, free: 32.02 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002551/0.007857, allocations: 179.2 kB / 0.6573 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0004151/0.008272, allocations: 0.623 MB / 0.6579 GB, free: 31.62 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003508/0.008623, allocations: 364.8 kB / 0.6583 GB, free: 31.49 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001065/0.00873, allocations: 113.9 kB / 0.6584 GB, free: 31.49 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001267/0.008856, allocations: 110.8 kB / 0.6585 GB, free: 31.49 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 8.88e-05/0.008945, allocations: 195.5 kB / 0.6587 GB, free: 31.34 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002744/0.00922, allocations: 360.5 kB / 0.659 GB, free: 31.18 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0004989/0.009718, allocations: 0.7182 MB / 0.6597 GB, free: 30.79 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.325e-06/0.009721, allocations: 0 / 0.6597 GB, free: 30.79 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.31e-07/0.009722, allocations: 3.938 kB / 0.6597 GB, free: 30.79 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.384e-06/0.009729, allocations: 1.469 kB / 0.6597 GB, free: 30.79 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 144
 * Number of variables: 144
Notification: Performance of Generate backend data structure: time 0.001108/0.01084, allocations: 1.418 MB / 0.6611 GB, free: 29.67 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.978e-05/0.01087, allocations: 8.438 kB / 0.6611 GB, free: 29.67 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001355/0.011, allocations: 141.8 kB / 0.6613 GB, free: 29.61 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003454/0.01135, allocations: 439.3 kB / 0.6617 GB, free: 29.27 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.909e-05/0.01138, allocations: 47.88 kB / 0.6617 GB, free: 29.25 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 7.356e-05/0.01145, allocations: 72.47 kB / 0.6618 GB, free: 29.22 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005382/0.01199, allocations: 0.6572 MB / 0.6624 GB, free: 28.81 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.044e-05/0.01202, allocations: 6.797 kB / 0.6625 GB, free: 28.8 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.614e-05/0.01206, allocations: 24.94 kB / 0.6625 GB, free: 28.79 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.196e-05/0.01207, allocations: 16.56 kB / 0.6625 GB, free: 28.79 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003394/0.01241, allocations: 442 kB / 0.6629 GB, free: 28.56 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001255/0.01366, allocations: 1.868 MB / 0.6647 GB, free: 27.16 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004837/0.01415, allocations: 0.5407 MB / 0.6653 GB, free: 26.81 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000175/0.01432, allocations: 318.3 kB / 0.6656 GB, free: 26.56 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.177e-05/0.01435, allocations: 14.22 kB / 0.6656 GB, free: 26.56 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004316/0.01478, allocations: 0.9307 MB / 0.6665 GB, free: 25.83 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 1.853e-06/0.01479, allocations: 0 / 0.6665 GB, free: 25.83 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.001929/0.01672, allocations: 2.581 MB / 0.669 GB, free: 24.04 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.455e-05/0.01681, allocations: 0.5959 MB / 0.6696 GB, free: 23.33 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002851/0.0171, allocations: 0.5065 MB / 0.6701 GB, free: 23.06 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 4.52e-05/0.01714, allocations: 59.83 kB / 0.6701 GB, free: 23.01 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001215/0.01726, allocations: 357.4 kB / 0.6705 GB, free: 22.71 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001374/0.0174, allocations: 351.4 kB / 0.6708 GB, free: 22.43 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001755/0.01757, allocations: 206.1 kB / 0.671 GB, free: 22.33 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 8.922e-05/0.01766, allocations: 0.5726 MB / 0.6716 GB, free: 21.79 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002236/0.01789, allocations: 424.5 kB / 0.672 GB, free: 21.46 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003038/0.01819, allocations: 0.8326 MB / 0.6728 GB, free: 20.57 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006551/0.01885, allocations: 1.483 MB / 0.6742 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.679e-06/0.01885, allocations: 2.656 kB / 0.6742 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=159) (initialization): time 0.0008479/0.0197, allocations: 1.302 MB / 0.6755 GB, free: 18.33 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 5.389e-05/0.01975, allocations: 267.5 kB / 0.6758 GB, free: 18.04 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.947e-06/0.01976, allocations: 7.031 kB / 0.6758 GB, free: 18.04 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.571e-05/0.01978, allocations: 14.12 kB / 0.6758 GB, free: 18.04 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004824/0.02026, allocations: 255.6 kB / 0.676 GB, free: 18.02 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.103e-05/0.02027, allocations: 16.11 kB / 0.6761 GB, free: 18.02 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002885/0.02056, allocations: 60.33 kB / 0.6761 GB, free: 17.99 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.733e-05/0.02062, allocations: 42.84 kB / 0.6762 GB, free: 17.98 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_lower.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 36
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (150):
 * Single equations (assignments): 141
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0003373/0.02095, allocations: 0.5535 MB / 0.6767 GB, free: 17.51 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001092/0.02106, allocations: 129.5 kB / 0.6768 GB, free: 17.46 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.408e-05/0.02115, allocations: 85.41 kB / 0.6769 GB, free: 17.39 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.26e-06/0.02115, allocations: 9.938 kB / 0.6769 GB, free: 17.39 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.769e-06/0.02116, allocations: 0 / 0.6769 GB, free: 17.39 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.867e-06/0.02117, allocations: 5.984 kB / 0.6769 GB, free: 17.39 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001384/0.02255, allocations: 2.03 MB / 0.6789 GB, free: 16.07 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.136e-06/0.02255, allocations: 4.891 kB / 0.6789 GB, free: 16.07 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004273/0.02298, allocations: 159.8 kB / 0.6791 GB, free: 16.05 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 5.039e-06/0.02299, allocations: 6.281 kB / 0.6791 GB, free: 16.05 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.675e-05/0.02303, allocations: 37.16 kB / 0.6791 GB, free: 16.04 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.21e-06/0.02304, allocations: 5 kB / 0.6791 GB, free: 16.04 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.112e-06/0.02304, allocations: 0 / 0.6791 GB, free: 16.04 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001092/0.02413, allocations: 1.853 MB / 0.6809 GB, free: 14.8 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002/0.02433, allocations: 171.9 kB / 0.6811 GB, free: 14.69 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.785e-05/0.02443, allocations: 42.89 kB / 0.6811 GB, free: 14.67 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002612/0.02469, allocations: 46.11 kB / 0.6812 GB, free: 14.66 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000135/0.02482, allocations: 95.28 kB / 0.6812 GB, free: 14.63 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.485e-05/0.02488, allocations: 31.59 kB / 0.6813 GB, free: 14.62 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0001595/0.02504, allocations: 326.6 kB / 0.6816 GB, free: 14.46 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 6e-08/0.02504, allocations: 1.688 kB / 0.6816 GB, free: 14.46 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0004784/0.02552, allocations: 245.8 kB / 0.6818 GB, free: 14.43 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 3
 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count)
 * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001307/0.02565, allocations: 186.5 kB / 0.682 GB, free: 14.3 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0007003/0.02635, allocations: 1.432 MB / 0.6834 GB, free: 13.16 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.503e-06/0.02635, allocations: 8 kB / 0.6834 GB, free: 13.15 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0003483/0.0267, allocations: 0.7977 MB / 0.6842 GB, free: 12.5 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007775/0.02748, allocations: 279.2 kB / 0.6845 GB, free: 12.43 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002526/0.03, allocations: 2.273 MB / 0.6867 GB, free: 10.96 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000119/0.03012, allocations: 174.4 kB / 0.6868 GB, free: 10.88 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0002484/0.03037, allocations: 91.89 kB / 0.6869 GB, free: 10.86 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005285/0.0309, allocations: 377.6 kB / 0.6873 GB, free: 10.77 MB / 0.5262 GB
Notification: Performance of SimCode: time 7.41e-07/0.0309, allocations: 1.125 kB / 0.6873 GB, free: 10.77 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01491/0.04581, allocations: 15.49 MB / 0.7024 GB, free: 15.64 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_gbode.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_ida.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.2877991260029376]