Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00097/0.00097, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001036/0.001036, allocations: 169 kB / 23.27 MB, free: 1.227 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9112/0.9112, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.469/1.469, allocations: 273.5 MB / 0.5212 GB, free: 14.74 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm")
translateModel(Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.112e-06/1.112e-06, allocations: 0 / 0.8303 GB, free: 15.06 MB / 0.6668 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.044e-05/1.155e-05, allocations: 2.312 kB / 0.8303 GB, free: 15.06 MB / 0.6668 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm): time 0.2817/0.2817, allocations: 143.3 MB / 0.9702 GB, free: 31.5 MB / 0.6668 GB
Notification: Performance of NFInst.instExpressions: time 0.03534/0.3171, allocations: 35.12 MB / 1.005 GB, free: 7.234 MB / 0.6668 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003549/0.3206, allocations: 142.8 kB / 1.005 GB, free: 7.164 MB / 0.6668 GB
Notification: Performance of NFTyping.typeComponents: time 0.00194/0.3226, allocations: 1.111 MB / 1.006 GB, free: 6.168 MB / 0.6668 GB
Notification: Performance of NFTyping.typeBindings: time 0.01389/0.3364, allocations: 8.761 MB / 1.014 GB, free: 15.46 MB / 0.6824 GB
Notification: Performance of NFTyping.typeClassSections: time 0.01983/0.3563, allocations: 10.2 MB / 1.024 GB, free: 5.328 MB / 0.6824 GB
Notification: Performance of NFFlatten.flatten: time 0.007486/0.3638, allocations: 8.864 MB / 1.033 GB, free: 12.43 MB / 0.698 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0023/0.3661, allocations: 2.148 MB / 1.035 GB, free: 10.25 MB / 0.698 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.01154/0.3776, allocations: 8.277 MB / 1.043 GB, free: 1.977 MB / 0.698 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.003179/0.3808, allocations: 2.971 MB / 1.046 GB, free: 15.01 MB / 0.7137 GB
Notification: Performance of NFPackage.collectConstants: time 0.0004521/0.3812, allocations: 332 kB / 1.046 GB, free: 14.68 MB / 0.7137 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.009609/0.3908, allocations: 5.74 MB / 1.052 GB, free: 8.93 MB / 0.7137 GB
Notification: Performance of NFScalarize.scalarize: time 0.0006264/0.3915, allocations: 1.07 MB / 1.053 GB, free: 7.855 MB / 0.7137 GB
Notification: Performance of NFVerifyModel.verify: time 0.001349/0.3928, allocations: 1.503 MB / 1.054 GB, free: 6.352 MB / 0.7137 GB
Notification: Performance of NFConvertDAE.convert: time 0.009125/0.4019, allocations: 8.956 MB / 1.063 GB, free: 13.36 MB / 0.7293 GB
Notification: Performance of FrontEnd - DAE generated: time 2.986e-06/0.4019, allocations: 0 / 1.063 GB, free: 13.36 MB / 0.7293 GB
Notification: Performance of FrontEnd: time 1.142e-06/0.402, allocations: 0 / 1.063 GB, free: 13.36 MB / 0.7293 GB
Notification: Performance of Transformations before backend: time 2.411e-05/0.402, allocations: 4 kB / 1.063 GB, free: 13.36 MB / 0.7293 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 651
 * Number of variables: 651
Notification: Performance of Generate backend data structure: time 0.006121/0.4081, allocations: 6.45 MB / 1.069 GB, free: 6.809 MB / 0.7293 GB
Notification: Performance of prepare preOptimizeDAE: time 2.969e-05/0.4081, allocations: 8.625 kB / 1.069 GB, free: 6.801 MB / 0.7293 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006095/0.4087, allocations: 0.5914 MB / 1.07 GB, free: 6.207 MB / 0.7293 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001827/0.4106, allocations: 1.786 MB / 1.072 GB, free: 4.379 MB / 0.7293 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000113/0.4107, allocations: 209.1 kB / 1.072 GB, free: 4.172 MB / 0.7293 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002627/0.4109, allocations: 299.9 kB / 1.072 GB, free: 3.879 MB / 0.7293 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002575/0.4135, allocations: 2.601 MB / 1.075 GB, free: 0.9727 MB / 0.7293 GB
Notification: Performance of preOpt findStateOrder (simulation): time 5.236e-05/0.4136, allocations: 15.88 kB / 1.075 GB, free: 0.957 MB / 0.7293 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000159/0.4137, allocations: 112 kB / 1.075 GB, free: 0.8477 MB / 0.7293 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.5e-05/0.4138, allocations: 67.94 kB / 1.075 GB, free: 0.7812 MB / 0.7293 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001467/0.4152, allocations: 1.236 MB / 1.076 GB, free: 15.5 MB / 0.7449 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007836/0.4231, allocations: 10.48 MB / 1.086 GB, free: 4.754 MB / 0.7449 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001501/0.4246, allocations: 1.622 MB / 1.088 GB, free: 3.129 MB / 0.7449 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0006855/0.4252, allocations: 0.6695 MB / 1.089 GB, free: 2.434 MB / 0.7449 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.0039/0.4291, allocations: 2.858 MB / 1.091 GB, free: 15.55 MB / 0.7605 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001017/0.4302, allocations: 1.289 MB / 1.093 GB, free: 14.11 MB / 0.7605 GB
Notification: Performance of pre-optimization done (n=269): time 3.997e-06/0.4302, allocations: 0 / 1.093 GB, free: 14.11 MB / 0.7605 GB
Notification: Performance of matching and sorting (n=276): time 0.006352/0.4365, allocations: 4.71 MB / 1.097 GB, free: 9.164 MB / 0.7605 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.263e-05/0.4366, allocations: 259.7 kB / 1.098 GB, free: 8.859 MB / 0.7605 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001246/0.4379, allocations: 1.922 MB / 1.099 GB, free: 6.914 MB / 0.7605 GB
Notification: Performance of collectPreVariables (initialization): time 0.0001187/0.438, allocations: 93.7 kB / 1.1 GB, free: 6.816 MB / 0.7605 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0006639/0.4386, allocations: 1.452 MB / 1.101 GB, free: 5.344 MB / 0.7605 GB
Notification: Performance of collectInitialBindings (initialization): time 0.000501/0.4391, allocations: 0.9723 MB / 1.102 GB, free: 4.363 MB / 0.7605 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0008792/0.44, allocations: 0.6961 MB / 1.103 GB, free: 3.656 MB / 0.7605 GB
Notification: Performance of setup shared object (initialization): time 8.734e-05/0.4401, allocations: 480.8 kB / 1.103 GB, free: 3.184 MB / 0.7605 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009439/0.441, allocations: 0.7907 MB / 1.104 GB, free: 2.367 MB / 0.7605 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001332/0.4424, allocations: 1.766 MB / 1.106 GB, free: 136 kB / 0.7605 GB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Epa.mass = Epa.tm_start (Epa.m_start[1] + Epa.massOffset = Epa.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Epv.mass = Epv.tm_start (Epv.m_start[1] + Epv.massOffset = Epv.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: LeftAtrium.mass = LeftAtrium.tm_start (LeftAtrium.m_start[1] + LeftAtrium.massOffset = LeftAtrium.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: LeftVentricle.mass = LeftVentricle.tm_start (LeftVentricle.m_start[1] + LeftVentricle.massOffset = LeftVentricle.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Eitha.mass = Eitha.tm_start (Eitha.m_start[1] + Eitha.massOffset = Eitha.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Eetha.mass = Eetha.tm_start (Eetha.m_start[1] + Eetha.massOffset = Eetha.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Est.mass = Est.tm_start (Est.m_start[1] + Est.massOffset = Est.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Eithv.mass = Eithv.tm_start (Eithv.m_start[1] + Eithv.massOffset = Eithv.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: Eethv.mass = Eethv.tm_start (Eethv.m_start[1] + Eethv.massOffset = Eethv.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: RightAtrium.mass = RightAtrium.tm_start (RightAtrium.m_start[1] + RightAtrium.massOffset = RightAtrium.tm_start)
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: RightVentricle.mass = RightVentricle.tm_start (RightVentricle.m_start[1] + RightVentricle.massOffset = RightVentricle.tm_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.01351/0.4559, allocations: 11.18 MB / 1.116 GB, free: 4.254 MB / 0.7762 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.308e-05/0.4559, allocations: 8 kB / 1.116 GB, free: 4.246 MB / 0.7762 GB
Notification: Performance of matching and sorting (n=484) (initialization): time 0.003487/0.4594, allocations: 3.041 MB / 1.119 GB, free: 1.074 MB / 0.7762 GB
Notification: Performance of prepare postOptimizeDAE: time 5.536e-05/0.4594, allocations: 101 kB / 1.12 GB, free: 0.957 MB / 0.7762 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.015e-05/0.4595, allocations: 24 kB / 1.12 GB, free: 0.9336 MB / 0.7762 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.0004572/0.4599, allocations: 395 kB / 1.12 GB, free: 500 kB / 0.7762 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.2049/0.6649, allocations: 0.7855 MB / 1.121 GB, free: 202.4 MB / 0.7762 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.003614/0.6685, allocations: 16.47 MB / 1.137 GB, free: 186 MB / 0.7762 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002325/0.6708, allocations: 160.7 kB / 1.137 GB, free: 186 MB / 0.7762 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002388/0.671, allocations: 139.2 kB / 1.137 GB, free: 186 MB / 0.7762 GB
Warning: Assuming fixed start value for the following 14 variables:
         peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         singleDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         singleDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         arterialPressure.pressureInt:VARIABLE(fixed = true stateSelect=StateSelect.always protected = true )  type: Real
         arterialPressure.t0:DISCRETE(unit = \"s\" fixed = true nominal = 60.0 protected = true )  type: Real
         arterialPressure.diastolicRunning:VARIABLE(unit = \"Pa\" fixed = true nominal = 1e5 stateSelect=StateSelect.always protected = true )  type: Real
         arterialPressure.systolicRunning:VARIABLE(unit = \"Pa\" fixed = true nominal = 1e5 stateSelect=StateSelect.always protected = true )  type: Real
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Warning: The initial conditions are over specified. The following 11 initial equations are redundant, so they are removed from the initialization system:
         Epa.mass = Epa.tm_start
         Epv.mass = Epv.tm_start
         LeftAtrium.mass = LeftAtrium.tm_start
         LeftVentricle.mass = LeftVentricle.tm_start
         Eitha.mass = Eitha.tm_start
         Eetha.mass = Eetha.tm_start
         Est.mass = Est.tm_start
         Eithv.mass = Eithv.tm_start
         Eethv.mass = Eethv.tm_start
         RightAtrium.mass = RightAtrium.tm_start
         RightVentricle.mass = RightVentricle.tm_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 105
 * Number of states: 0 ()
 * Number of discrete variables: 78 (LAtrialElastance.Tvs,$PRE.LAtrialElastance.Tvs,RAtrialElastance.Tvs,$PRE.RAtrialElastance.Tvs,rightHeartPower.y_last,$PRE.rightHeartPower.y_last,leftHeartPower.y_last,$PRE.leftHeartPower.y_last,$PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$whenCondition8,$whenCondition7,arterialPressure.meanMeasured,arterialPressure.t0,$PRE.arterialPressure.t0,arterialPressure.b,$whenCondition6,$PRE.RVentricularElastance.HP,$PRE.RAtrialElastance.HP,$PRE.LVentricularElastance.HP,$PRE.LAtrialElastance.HP,$PRE.LAtrialElastance.Tas,$PRE.LAtrialElastance.T0,$PRE.LVentricularElastance.Tas,$PRE.LVentricularElastance.T0,$PRE.LVentricularElastance.Tvs,$PRE.RAtrialElastance.Tas,$PRE.RAtrialElastance.T0,$PRE.RVentricularElastance.Tas,$PRE.RVentricularElastance.T0,$PRE.RVentricularElastance.Tvs,$PRE.singleDose.pulse.T_start,$PRE.singleDose.pulse.count,$PRE.central.rising,$PRE.peripheral.rising,AorticValve.open,LAtrialElastance.Tas,LAtrialElastance.T0,LAtrialElastance.HP,LAtrialElastance.b,LVentricularElastance.Tas,LVentricularElastance.T0,LVentricularElastance.Tvs,LVentricularElastance.HP,LVentricularElastance.b,MitralValve.open,PulmonaryValve.open,RAtrialElastance.Tas,RAtrialElastance.T0,RAtrialElastance.HP,RAtrialElastance.b,RVentricularElastance.Tas,RVentricularElastance.T0,RVentricularElastance.Tvs,RVentricularElastance.HP,RVentricularElastance.b,TricuspidValve.open,arterialPressure.systolicMeassured,arterialPressure.diastolicMeassured,singleDose.pulse.T_start,singleDose.pulse.count,central.rising,peripheral.rising,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition5,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (464):
 * Single equations (assignments): 446
 * Array equations: 0
 * Algorithm blocks: 3
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 15
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 15 systems
   {(1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,3), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1)}
Notification: Performance of prepare postOptimizeDAE: time 0.0008186/0.6719, allocations: 0.5263 MB / 1.138 GB, free: 185.8 MB / 0.7762 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0005255/0.6724, allocations: 397.4 kB / 1.138 GB, free: 185.8 MB / 0.7762 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003085/0.6755, allocations: 2.254 MB / 1.14 GB, free: 185.3 MB / 0.7762 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.694e-05/0.6755, allocations: 26.62 kB / 1.14 GB, free: 185.3 MB / 0.7762 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.378e-06/0.6755, allocations: 2.156 kB / 1.14 GB, free: 185.3 MB / 0.7762 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.903e-05/0.6755, allocations: 13.5 kB / 1.14 GB, free: 185.3 MB / 0.7762 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005254/0.6808, allocations: 3.801 MB / 1.144 GB, free: 184.6 MB / 0.7762 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.843e-06/0.6808, allocations: 3.062 kB / 1.144 GB, free: 184.6 MB / 0.7762 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00141/0.6822, allocations: 434.1 kB / 1.144 GB, free: 184.6 MB / 0.7762 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.0004758/0.6827, allocations: 367 kB / 1.145 GB, free: 184.4 MB / 0.7762 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001532/0.6828, allocations: 86.77 kB / 1.145 GB, free: 184.4 MB / 0.7762 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.003056/0.6859, allocations: 16.41 MB / 1.161 GB, free: 168 MB / 0.7762 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.82e-07/0.6859, allocations: 0 / 1.161 GB, free: 168 MB / 0.7762 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003789/0.6897, allocations: 3.009 MB / 1.164 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.000795/0.6905, allocations: 0.5183 MB / 1.164 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003349/0.6908, allocations: 69.11 kB / 1.164 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0011/0.6919, allocations: 110.3 kB / 1.164 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003392/0.6922, allocations: 256.5 kB / 1.165 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001497/0.6924, allocations: 83.91 kB / 1.165 GB, free: 167.3 MB / 0.7762 GB
Notification: Performance of sorting global known variables: time 0.0007783/0.6932, allocations: 1.032 MB / 1.166 GB, free: 167.1 MB / 0.7762 GB
Notification: Performance of sort global known variables: time 1.9e-07/0.6932, allocations: 0.5469 kB / 1.166 GB, free: 167.1 MB / 0.7762 GB
Notification: Performance of remove unused functions: time 0.004459/0.6976, allocations: 2.445 MB / 1.168 GB, free: 167.1 MB / 0.7762 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 35 (peripheral.AUC,peripheral.C,elim.MExc,central.AUC,central.C,singleDose.variableDose.TotalCumulativeMass,singleDose.TotalCumulativeMass,arterialPressure.pressureInt,arterialPressure.systolicRunning,arterialPressure.diastolicRunning,leftHeartPower.x,rightHeartPower.x,RightVentricle.substanceMasses[1],RightVentricle.enthalpy,RightAtrium.substanceMasses[1],RightAtrium.enthalpy,Eethv.substanceMasses[1],Eethv.enthalpy,Eithv.substanceMasses[1],Eithv.enthalpy,Est.substanceMasses[1],Est.enthalpy,inertia.q_in.m_flow,Eetha.substanceMasses[1],Eetha.enthalpy,Eitha.substanceMasses[1],Eitha.enthalpy,LeftVentricle.substanceMasses[1],LeftVentricle.enthalpy,LeftAtrium.substanceMasses[1],LeftAtrium.enthalpy,Epv.substanceMasses[1],Epv.enthalpy,Epa.substanceMasses[1],Epa.enthalpy)
 * Number of discrete variables: 51 (LAtrialElastance.b,LVentricularElastance.b,RAtrialElastance.b,RVentricularElastance.b,arterialPressure.b,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,peripheral.rising,peripheral.Cmin,peripheral.Cmax,central.rising,central.Cmin,central.Cmax,singleDose.pulse.count,singleDose.pulse.T_start,arterialPressure.meanMeasured,arterialPressure.diastolicMeassured,arterialPressure.systolicMeassured,arterialPressure.t0,leftHeartPower.y_last,rightHeartPower.y_last,TricuspidValve.open,RVentricularElastance.HP,RVentricularElastance.Tvs,RVentricularElastance.T0,RVentricularElastance.Tas,RAtrialElastance.HP,RAtrialElastance.Tvs,RAtrialElastance.T0,RAtrialElastance.Tas,PulmonaryValve.open,MitralValve.open,LVentricularElastance.HP,LVentricularElastance.Tvs,LVentricularElastance.T0,LVentricularElastance.Tas,LAtrialElastance.HP,LAtrialElastance.Tvs,LAtrialElastance.T0,LAtrialElastance.Tas,AorticValve.open)
 * Number of discrete states: 25 (singleDose.pulse.count,rightHeartPower.x,leftHeartPower.x,arterialPressure.t0,arterialPressure.diastolicRunning,arterialPressure.systolicRunning,arterialPressure.pressureInt,RVentricularElastance.T0,RVentricularElastance.HP,RAtrialElastance.T0,RAtrialElastance.HP,LVentricularElastance.T0,LVentricularElastance.HP,LAtrialElastance.T0,LAtrialElastance.HP,peripheral.Cmin,$whenCondition4,peripheral.Cmax,$whenCondition3,peripheral.rising,central.Cmin,$whenCondition2,central.Cmax,$whenCondition1,central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (264):
 * Single equations (assignments): 223
 * Array equations: 0
 * Algorithm blocks: 2
 * Record equations: 0
 * When equations: 24
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 15
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 15 systems
   {(1,1), (1,3), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1), (1,1)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.003759/0.7014, allocations: 3.08 MB / 1.171 GB, free: 167 MB / 0.7762 GB
Notification: Performance of simCode: created initialization part: time 0.003153/0.7045, allocations: 2.857 MB / 1.174 GB, free: 165.9 MB / 0.7762 GB
Notification: Performance of simCode: created event and clocks part: time 3.116e-06/0.7045, allocations: 3 kB / 1.174 GB, free: 165.9 MB / 0.7762 GB
Notification: Performance of simCode: created simulation system equations: time 0.00155/0.7061, allocations: 1.755 MB / 1.176 GB, free: 165 MB / 0.7762 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.003083/0.7092, allocations: 1.131 MB / 1.177 GB, free: 164.9 MB / 0.7762 GB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009183/0.7184, allocations: 6.275 MB / 1.183 GB, free: 162.6 MB / 0.7762 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004072/0.7188, allocations: 0.5723 MB / 1.183 GB, free: 162.5 MB / 0.7762 GB
Notification: Performance of simCode: alias equations: time 0.001498/0.7203, allocations: 489.7 kB / 1.184 GB, free: 162.4 MB / 0.7762 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.005045/0.7253, allocations: 1.035 MB / 1.185 GB, free: 162.3 MB / 0.7762 GB
Notification: Performance of SimCode: time 8.62e-07/0.7253, allocations: 0 / 1.185 GB, free: 162.3 MB / 0.7762 GB
Notification: Performance of Templates: time 0.08703/0.8123, allocations: 101.4 MB / 1.284 GB, free: 104.6 MB / 0.7762 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_gbode.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.Examples.PKPD_integration.PKPD_HemodynamicsMeurs_flatNorm_ida.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 44.003161281812936]