Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001027/0.001027, allocations: 81.95 kB / 19.87 MB, free: 4.617 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001628/0.001628, allocations: 169.7 kB / 23.27 MB, free: 1.223 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9804/0.9804, allocations: 177.1 MB / 203.7 MB, free: 5.512 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.647/1.647, allocations: 273.5 MB / 0.5212 GB, free: 14.73 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.713e-06/1.713e-06, allocations: 0 / 0.6476 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.944e-05/2.115e-05, allocations: 5.125 kB / 0.6476 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00392/0.003941, allocations: 5.633 MB / 0.6531 GB, free: 34.72 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001958/0.005899, allocations: 1.309 MB / 0.6544 GB, free: 33.81 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002458/0.006145, allocations: 7.906 kB / 0.6544 GB, free: 33.81 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002252/0.00637, allocations: 129.7 kB / 0.6545 GB, free: 33.73 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004534/0.006824, allocations: 362.7 kB / 0.6549 GB, free: 33.47 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0003856/0.007209, allocations: 266.3 kB / 0.6551 GB, free: 33.3 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.000825/0.008034, allocations: 1.27 MB / 0.6564 GB, free: 32.59 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003028/0.008337, allocations: 213.8 kB / 0.6566 GB, free: 32.46 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005573/0.008894, allocations: 0.6605 MB / 0.6572 GB, free: 32.18 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0003814/0.009276, allocations: 386.3 kB / 0.6576 GB, free: 32.05 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 9.81e-05/0.009374, allocations: 111 kB / 0.6577 GB, free: 32.05 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001207/0.009494, allocations: 107.8 kB / 0.6578 GB, free: 32.05 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 9.176e-05/0.009586, allocations: 208.9 kB / 0.658 GB, free: 31.9 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0002403/0.009826, allocations: 379.3 kB / 0.6583 GB, free: 31.73 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0004777/0.0103, allocations: 0.7415 MB / 0.6591 GB, free: 31.35 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.437e-06/0.01031, allocations: 0 / 0.6591 GB, free: 31.35 MB / 0.5262 GB Notification: Performance of FrontEnd: time 7.62e-07/0.01031, allocations: 4.812 kB / 0.6591 GB, free: 31.34 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 7.985e-06/0.01032, allocations: 3.938 kB / 0.6591 GB, free: 31.34 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001186/0.0115, allocations: 1.484 MB / 0.6605 GB, free: 30.19 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.451e-05/0.01154, allocations: 8.438 kB / 0.6605 GB, free: 30.19 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001534/0.01169, allocations: 154.9 kB / 0.6607 GB, free: 30.12 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003498/0.01204, allocations: 438.9 kB / 0.6611 GB, free: 29.79 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.279e-05/0.01208, allocations: 52.44 kB / 0.6611 GB, free: 29.77 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.445e-05/0.01216, allocations: 77.81 kB / 0.6612 GB, free: 29.75 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.00056/0.01272, allocations: 0.682 MB / 0.6619 GB, free: 29.35 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.578e-05/0.01274, allocations: 10.73 kB / 0.6619 GB, free: 29.34 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.633e-05/0.01278, allocations: 28.34 kB / 0.6619 GB, free: 29.32 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.154e-05/0.01279, allocations: 15.44 kB / 0.6619 GB, free: 29.32 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003555/0.01315, allocations: 456.9 kB / 0.6624 GB, free: 29.1 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001663/0.01481, allocations: 1.884 MB / 0.6642 GB, free: 27.84 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0003509/0.01516, allocations: 478.5 kB / 0.6647 GB, free: 27.56 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001795/0.01534, allocations: 316.5 kB / 0.665 GB, free: 27.34 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 2.464e-05/0.01536, allocations: 14.22 kB / 0.665 GB, free: 27.34 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004198/0.01578, allocations: 0.8691 MB / 0.6658 GB, free: 26.64 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.204e-06/0.01579, allocations: 1.406 kB / 0.6658 GB, free: 26.64 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.001912/0.0177, allocations: 2.402 MB / 0.6682 GB, free: 25.11 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.974e-05/0.01779, allocations: 0.5426 MB / 0.6687 GB, free: 24.47 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002732/0.01806, allocations: 0.4928 MB / 0.6692 GB, free: 24.21 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 4.344e-05/0.01811, allocations: 59.86 kB / 0.6692 GB, free: 24.16 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001313/0.01824, allocations: 378.4 kB / 0.6696 GB, free: 23.84 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001358/0.01837, allocations: 351.5 kB / 0.6699 GB, free: 23.57 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001756/0.01855, allocations: 195.7 kB / 0.6701 GB, free: 23.46 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 9.763e-05/0.01865, allocations: 0.5793 MB / 0.6707 GB, free: 22.92 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002293/0.01887, allocations: 435.5 kB / 0.6711 GB, free: 22.59 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002967/0.01917, allocations: 0.7932 MB / 0.6719 GB, free: 21.76 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0006745/0.01985, allocations: 1.458 MB / 0.6733 GB, free: 20.41 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.288e-06/0.01985, allocations: 1.688 kB / 0.6733 GB, free: 20.41 MB / 0.5262 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.0008413/0.02069, allocations: 1.284 MB / 0.6746 GB, free: 19.57 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 5.984e-05/0.02075, allocations: 264.1 kB / 0.6748 GB, free: 19.28 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.879e-06/0.02076, allocations: 6.594 kB / 0.6748 GB, free: 19.28 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.784e-05/0.02078, allocations: 17.22 kB / 0.6748 GB, free: 19.28 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005049/0.02128, allocations: 245.9 kB / 0.6751 GB, free: 19.25 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.167e-05/0.0213, allocations: 19.94 kB / 0.6751 GB, free: 19.25 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003073/0.0216, allocations: 55.91 kB / 0.6751 GB, free: 19.23 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.493e-05/0.02165, allocations: 39.53 kB / 0.6752 GB, free: 19.22 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003557/0.022, allocations: 0.5582 MB / 0.6757 GB, free: 18.74 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001039/0.02211, allocations: 120.7 kB / 0.6758 GB, free: 18.69 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.886e-05/0.0222, allocations: 90.36 kB / 0.6759 GB, free: 18.63 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.41e-06/0.0222, allocations: 8.531 kB / 0.6759 GB, free: 18.63 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.18e-05/0.02221, allocations: 0 / 0.6759 GB, free: 18.63 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.008e-05/0.02222, allocations: 4.5 kB / 0.6759 GB, free: 18.63 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00142/0.02364, allocations: 1.757 MB / 0.6777 GB, free: 17.58 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.886e-06/0.02365, allocations: 0 / 0.6777 GB, free: 17.58 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004346/0.02408, allocations: 160 kB / 0.6778 GB, free: 17.57 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.069e-06/0.02409, allocations: 7.25 kB / 0.6778 GB, free: 17.57 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.704e-05/0.02413, allocations: 38.12 kB / 0.6779 GB, free: 17.55 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.859e-06/0.02414, allocations: 7.734 kB / 0.6779 GB, free: 17.55 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.623e-06/0.02414, allocations: 0 / 0.6779 GB, free: 17.55 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001093/0.02523, allocations: 1.619 MB / 0.6794 GB, free: 16.54 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 7e-05/0.0253, allocations: 78.8 kB / 0.6795 GB, free: 16.48 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001025/0.02541, allocations: 39.98 kB / 0.6796 GB, free: 16.46 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002265/0.02563, allocations: 45.89 kB / 0.6796 GB, free: 16.45 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000133/0.02576, allocations: 90.66 kB / 0.6797 GB, free: 16.43 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.738e-05/0.0258, allocations: 31.92 kB / 0.6797 GB, free: 16.42 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001672/0.02597, allocations: 314.8 kB / 0.68 GB, free: 16.26 MB / 0.5262 GB Notification: Performance of sort global known variables: time 6e-08/0.02597, allocations: 0 / 0.68 GB, free: 16.26 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.000488/0.02646, allocations: 256.8 kB / 0.6803 GB, free: 16.23 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000156/0.02661, allocations: 187.1 kB / 0.6804 GB, free: 16.11 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0007062/0.02732, allocations: 1.432 MB / 0.6818 GB, free: 14.96 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.014e-06/0.02732, allocations: 0 / 0.6818 GB, free: 14.96 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0003706/0.02769, allocations: 0.7889 MB / 0.6826 GB, free: 14.32 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006787/0.02837, allocations: 264.5 kB / 0.6829 GB, free: 14.25 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002766/0.03114, allocations: 2.332 MB / 0.6851 GB, free: 12.78 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001157/0.03125, allocations: 174.5 kB / 0.6853 GB, free: 12.7 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0002804/0.03153, allocations: 90.33 kB / 0.6854 GB, free: 12.69 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005379/0.03207, allocations: 370.1 kB / 0.6857 GB, free: 12.6 MB / 0.5262 GB Notification: Performance of SimCode: time 9.21e-07/0.03207, allocations: 0 / 0.6857 GB, free: 12.6 MB / 0.5262 GB Notification: Performance of Templates: time 0.01531/0.04738, allocations: 14.73 MB / 0.7001 GB, free: 2.223 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_ida.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 10.790416692849249]