Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001363/0.001363, allocations: 81.08 kB / 19.87 MB, free: 4.621 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001665/0.001665, allocations: 169 kB / 23.28 MB, free: 1.219 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.003/1.003, allocations: 177.1 MB / 203.7 MB, free: 5.512 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.589/1.589, allocations: 273.5 MB / 0.5212 GB, free: 14.76 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.776e-06/2.776e-06, allocations: 1.469 kB / 0.6474 GB, free: 38.52 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.369e-05/2.647e-05, allocations: 4.844 kB / 0.6474 GB, free: 38.52 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001576/0.001603, allocations: 1.292 MB / 0.6487 GB, free: 37.66 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.0001894/0.001792, allocations: 51.89 kB / 0.6487 GB, free: 37.63 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 3.373e-05/0.001826, allocations: 1.781 kB / 0.6487 GB, free: 37.63 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 7.62e-05/0.001902, allocations: 5.781 kB / 0.6487 GB, free: 37.63 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 3.682e-05/0.001939, allocations: 2.734 kB / 0.6487 GB, free: 37.63 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0001463/0.002085, allocations: 24.56 kB / 0.6487 GB, free: 37.62 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.000128/0.002213, allocations: 142.7 kB / 0.6489 GB, free: 37.59 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 3.606e-05/0.002249, allocations: 5.734 kB / 0.6489 GB, free: 37.58 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001077/0.002357, allocations: 76.38 kB / 0.649 GB, free: 37.56 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0001355/0.002492, allocations: 79.22 kB / 0.649 GB, free: 37.55 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 2.868e-05/0.002521, allocations: 10.25 kB / 0.649 GB, free: 37.55 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 1.634e-05/0.002537, allocations: 8.281 kB / 0.649 GB, free: 37.55 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 2.883e-05/0.002566, allocations: 31.22 kB / 0.6491 GB, free: 37.54 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 3.967e-05/0.002606, allocations: 35.42 kB / 0.6491 GB, free: 37.52 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0001003/0.002706, allocations: 92.19 kB / 0.6492 GB, free: 37.5 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.545e-06/0.002709, allocations: 1.344 kB / 0.6492 GB, free: 37.5 MB / 0.5262 GB Notification: Performance of FrontEnd: time 9.72e-07/0.00271, allocations: 0 / 0.6492 GB, free: 37.5 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 3.828e-06/0.002714, allocations: 0 / 0.6492 GB, free: 37.5 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 12 * Number of variables: 12 Notification: Performance of Generate backend data structure: time 0.0008643/0.003578, allocations: 0.5939 MB / 0.6498 GB, free: 37.11 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 2.919e-05/0.003607, allocations: 9.688 kB / 0.6498 GB, free: 37.11 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 3.834e-05/0.003645, allocations: 12.98 kB / 0.6498 GB, free: 37.11 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001099/0.003755, allocations: 129.4 kB / 0.6499 GB, free: 36.97 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.277e-06/0.003765, allocations: 2.312 kB / 0.6499 GB, free: 36.97 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 1.202e-05/0.003777, allocations: 9.031 kB / 0.6499 GB, free: 36.96 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002552/0.004032, allocations: 159.9 kB / 0.6501 GB, free: 36.89 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.203e-06/0.004039, allocations: 192 / 0.6501 GB, free: 36.89 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.374e-05/0.004053, allocations: 6.062 kB / 0.6501 GB, free: 36.88 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.342e-06/0.004059, allocations: 2.125 kB / 0.6501 GB, free: 36.88 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 6.705e-05/0.004126, allocations: 29.12 kB / 0.6501 GB, free: 36.88 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001778/0.004304, allocations: 258.7 kB / 0.6504 GB, free: 36.61 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 5.771e-05/0.004362, allocations: 38.77 kB / 0.6504 GB, free: 36.57 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 5.425e-05/0.004416, allocations: 33.84 kB / 0.6504 GB, free: 36.56 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 1.321e-05/0.004429, allocations: 4.688 kB / 0.6504 GB, free: 36.56 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.34e-05/0.004443, allocations: 35.58 kB / 0.6505 GB, free: 36.52 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=11): time 1.263e-06/0.004444, allocations: 0 / 0.6505 GB, free: 36.52 MB / 0.5262 GB Notification: Performance of matching and sorting (n=11): time 0.0002713/0.004715, allocations: 102.5 kB / 0.6506 GB, free: 36.46 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 2.251e-05/0.004738, allocations: 53.38 kB / 0.6506 GB, free: 36.4 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.061e-05/0.004798, allocations: 174.3 kB / 0.6508 GB, free: 36.23 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 1.266e-05/0.004811, allocations: 29.7 kB / 0.6508 GB, free: 36.2 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 3.737e-05/0.004848, allocations: 140.2 kB / 0.651 GB, free: 36.06 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 2.572e-05/0.004874, allocations: 39 kB / 0.651 GB, free: 36.03 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 5.995e-05/0.004934, allocations: 38.14 kB / 0.651 GB, free: 35.99 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 4.702e-05/0.004981, allocations: 0.4901 MB / 0.6515 GB, free: 35.5 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 5.252e-05/0.005034, allocations: 14.22 kB / 0.6515 GB, free: 35.5 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 5.884e-05/0.005092, allocations: 38.17 kB / 0.6516 GB, free: 35.46 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0001134/0.005206, allocations: 58.56 kB / 0.6516 GB, free: 35.43 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.924e-06/0.005208, allocations: 0 / 0.6516 GB, free: 35.43 MB / 0.5262 GB Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001905/0.005398, allocations: 86.02 kB / 0.6517 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 1.352e-05/0.005412, allocations: 8.109 kB / 0.6517 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.458e-06/0.005416, allocations: 1.219 kB / 0.6517 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.042e-05/0.005427, allocations: 3.938 kB / 0.6517 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002851/0.005712, allocations: 74.45 kB / 0.6518 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.835e-06/0.005715, allocations: 0 / 0.6518 GB, free: 35.39 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001938/0.005908, allocations: 60.8 kB / 0.6518 GB, free: 35.38 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.497e-05/0.005923, allocations: 2.156 kB / 0.6518 GB, free: 35.38 MB / 0.5262 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 2 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (12): * Single equations (assignments): 12 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 5.701e-05/0.00598, allocations: 162.8 kB / 0.652 GB, free: 35.21 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 2.655e-05/0.006007, allocations: 13.83 kB / 0.652 GB, free: 35.21 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002843/0.006291, allocations: 170.2 kB / 0.6522 GB, free: 35.12 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.128e-06/0.006295, allocations: 6.25 kB / 0.6522 GB, free: 35.12 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.174e-06/0.006297, allocations: 5.25 kB / 0.6522 GB, free: 35.12 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.517e-06/0.006301, allocations: 0 / 0.6522 GB, free: 35.12 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001232/0.006424, allocations: 136.1 kB / 0.6523 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.543e-06/0.006426, allocations: 0 / 0.6523 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002736/0.006699, allocations: 85.81 kB / 0.6524 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 3.327e-06/0.006703, allocations: 2 kB / 0.6524 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.415e-05/0.006717, allocations: 4 kB / 0.6524 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.994e-06/0.006719, allocations: 2.344 kB / 0.6524 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.012e-06/0.00672, allocations: 0 / 0.6524 GB, free: 34.98 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002147/0.006934, allocations: 165.1 kB / 0.6526 GB, free: 34.87 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 1.337e-05/0.006948, allocations: 16.38 kB / 0.6526 GB, free: 34.86 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.011e-05/0.006968, allocations: 8.25 kB / 0.6526 GB, free: 34.86 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001881/0.007156, allocations: 56.27 kB / 0.6526 GB, free: 34.85 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 6.581e-05/0.007222, allocations: 24.53 kB / 0.6527 GB, free: 34.84 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.492e-05/0.007237, allocations: 13.41 kB / 0.6527 GB, free: 34.84 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 2.251e-05/0.007259, allocations: 130 kB / 0.6528 GB, free: 34.71 MB / 0.5262 GB Notification: Performance of sort global known variables: time 6e-08/0.007259, allocations: 0 / 0.6528 GB, free: 34.71 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0002138/0.007473, allocations: 32.78 kB / 0.6528 GB, free: 34.71 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (21): * Single equations (assignments): 21 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 7.044e-05/0.007544, allocations: 99.67 kB / 0.6529 GB, free: 34.62 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0001777/0.007721, allocations: 63.62 kB / 0.653 GB, free: 34.61 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.653e-06/0.007723, allocations: 2.25 kB / 0.653 GB, free: 34.61 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 9.173e-05/0.007815, allocations: 57.98 kB / 0.653 GB, free: 34.59 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000194/0.008009, allocations: 17 kB / 0.6531 GB, free: 34.58 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005137/0.008522, allocations: 242.8 kB / 0.6533 GB, free: 34.41 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 2.954e-05/0.008552, allocations: 67.5 kB / 0.6534 GB, free: 34.34 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 9.127e-05/0.008643, allocations: 19.91 kB / 0.6534 GB, free: 34.34 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000155/0.008798, allocations: 90.58 kB / 0.6535 GB, free: 34.27 MB / 0.5262 GB Notification: Performance of SimCode: time 6.92e-07/0.008799, allocations: 0 / 0.6535 GB, free: 34.27 MB / 0.5262 GB Notification: Performance of Templates: time 0.005432/0.01423, allocations: 2.972 MB / 0.6564 GB, free: 34.05 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_ida.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 4.851765945088118]