Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001429/0.001429, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001764/0.001764, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9425/0.9425, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.733/1.733, allocations: 273.5 MB / 0.5212 GB, free: 14.77 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.833e-06/1.833e-06, allocations: 0 / 0.6474 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.926e-05/2.109e-05, allocations: 4.984 kB / 0.6474 GB, free: 38.63 MB / 0.5262 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.0888/0.08882, allocations: 43.96 MB / 0.6903 GB, free: 14.25 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.003973/0.09279, allocations: 5.053 MB / 0.6953 GB, free: 9.188 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001454/0.09294, allocations: 23.75 kB / 0.6953 GB, free: 9.164 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001594/0.0931, allocations: 59.33 kB / 0.6953 GB, free: 9.105 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001064/0.09416, allocations: 0.7734 MB / 0.6961 GB, free: 8.328 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.0008739/0.09504, allocations: 0.8399 MB / 0.6969 GB, free: 7.492 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003109/0.09535, allocations: 0.5092 MB / 0.6974 GB, free: 6.98 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.000182/0.09553, allocations: 188.2 kB / 0.6976 GB, free: 6.797 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001356/0.09567, allocations: 247.3 kB / 0.6978 GB, free: 6.555 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001304/0.0958, allocations: 135.5 kB / 0.698 GB, free: 6.422 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.699e-05/0.09582, allocations: 28 kB / 0.698 GB, free: 6.395 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.202e-05/0.09586, allocations: 28 kB / 0.698 GB, free: 6.367 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.458e-05/0.0959, allocations: 79.67 kB / 0.6981 GB, free: 6.289 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 7.001e-05/0.09597, allocations: 139.5 kB / 0.6982 GB, free: 6.152 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002173/0.09619, allocations: 334.7 kB / 0.6985 GB, free: 5.824 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.016e-06/0.09619, allocations: 0 / 0.6985 GB, free: 5.824 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.103e-06/0.09619, allocations: 0 / 0.6985 GB, free: 5.824 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.559e-06/0.0962, allocations: 0 / 0.6985 GB, free: 5.824 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0004834/0.09668, allocations: 0.7174 MB / 0.6992 GB, free: 5.07 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.878e-05/0.09671, allocations: 12.03 kB / 0.6993 GB, free: 5.059 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.372e-05/0.09676, allocations: 64.66 kB / 0.6993 GB, free: 4.996 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000275/0.09704, allocations: 361.2 kB / 0.6997 GB, free: 4.613 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.859e-05/0.09706, allocations: 20.88 kB / 0.6997 GB, free: 4.594 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.735e-05/0.09708, allocations: 39.77 kB / 0.6997 GB, free: 4.559 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001432/0.09723, allocations: 153.4 kB / 0.6999 GB, free: 4.402 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.038e-05/0.09724, allocations: 3.938 kB / 0.6999 GB, free: 4.398 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.176e-05/0.09725, allocations: 8 kB / 0.6999 GB, free: 4.391 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.36e-06/0.09725, allocations: 8 kB / 0.6999 GB, free: 4.383 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 7.248e-05/0.09733, allocations: 71.38 kB / 0.6999 GB, free: 4.316 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006035/0.09793, allocations: 0.6384 MB / 0.7006 GB, free: 3.648 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001205/0.09805, allocations: 102.9 kB / 0.7007 GB, free: 3.535 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 4.313e-05/0.09809, allocations: 59.64 kB / 0.7007 GB, free: 3.473 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.493e-05/0.09811, allocations: 4 kB / 0.7007 GB, free: 3.469 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.148e-05/0.09812, allocations: 41.39 kB / 0.7008 GB, free: 3.418 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.052e-06/0.09812, allocations: 0 / 0.7008 GB, free: 3.418 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.0001859/0.09831, allocations: 176 kB / 0.7009 GB, free: 3.242 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.559e-05/0.09832, allocations: 55.41 kB / 0.701 GB, free: 3.176 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000139/0.09846, allocations: 378.5 kB / 0.7014 GB, free: 2.793 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 9.177e-06/0.09847, allocations: 29.7 kB / 0.7014 GB, free: 2.758 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 7.371e-05/0.09854, allocations: 263.2 kB / 0.7016 GB, free: 2.492 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.862e-05/0.09857, allocations: 87.3 kB / 0.7017 GB, free: 2.406 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.006e-05/0.09862, allocations: 71.33 kB / 0.7018 GB, free: 2.328 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.896e-05/0.09867, allocations: 0.5156 MB / 0.7023 GB, free: 1.801 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.491e-05/0.09871, allocations: 31.97 kB / 0.7023 GB, free: 1.77 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.845e-05/0.09877, allocations: 119 kB / 0.7024 GB, free: 1.625 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001651/0.09893, allocations: 224.8 kB / 0.7026 GB, free: 1.375 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.044e-06/0.09893, allocations: 4 kB / 0.7026 GB, free: 1.371 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.000168/0.0991, allocations: 227.1 kB / 0.7029 GB, free: 1.145 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 9.538e-06/0.09911, allocations: 8 kB / 0.7029 GB, free: 1.137 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.318e-06/0.09911, allocations: 7.922 kB / 0.7029 GB, free: 1.129 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 8.165e-06/0.09912, allocations: 7.938 kB / 0.7029 GB, free: 1.121 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001373/0.09926, allocations: 75.31 kB / 0.703 GB, free: 1.051 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.446e-06/0.09926, allocations: 4 kB / 0.703 GB, free: 1.047 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 6.431e-05/0.09933, allocations: 35.97 kB / 0.703 GB, free: 1.012 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.275e-05/0.09934, allocations: 4 kB / 0.703 GB, free: 1.008 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.458e-05/0.09941, allocations: 176.5 kB / 0.7032 GB, free: 0.8242 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.916e-05/0.09944, allocations: 39.77 kB / 0.7032 GB, free: 0.7852 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001296/0.09957, allocations: 153 kB / 0.7034 GB, free: 0.6289 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.254e-06/0.09958, allocations: 3.938 kB / 0.7034 GB, free: 0.625 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.322e-06/0.09958, allocations: 4 kB / 0.7034 GB, free: 0.6211 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.238e-06/0.09958, allocations: 3.984 kB / 0.7034 GB, free: 0.6172 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000157/0.09974, allocations: 205.1 kB / 0.7036 GB, free: 400 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.042e-06/0.09974, allocations: 3.938 kB / 0.7036 GB, free: 396 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.58e-05/0.09983, allocations: 35.98 kB / 0.7036 GB, free: 360 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.835e-06/0.09984, allocations: 3.984 kB / 0.7036 GB, free: 356 kB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.191e-05/0.09985, allocations: 4 kB / 0.7036 GB, free: 352 kB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.212e-06/0.09985, allocations: 4 kB / 0.7036 GB, free: 348 kB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.02e-07/0.09985, allocations: 0 / 0.7036 GB, free: 348 kB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002022/0.1001, allocations: 346.3 kB / 0.7039 GB, free: 15.98 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 5.963e-05/0.1001, allocations: 47.69 kB / 0.704 GB, free: 15.93 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.008e-05/0.1001, allocations: 0 / 0.704 GB, free: 15.93 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 5.533e-05/0.1002, allocations: 4 kB / 0.704 GB, free: 15.93 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.871e-05/0.1002, allocations: 23.91 kB / 0.704 GB, free: 15.91 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.625e-06/0.1002, allocations: 4 kB / 0.704 GB, free: 15.9 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0001105/0.1003, allocations: 235 kB / 0.7042 GB, free: 15.68 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 7e-08/0.1003, allocations: 0 / 0.7042 GB, free: 15.68 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.0001984/0.1005, allocations: 87.84 kB / 0.7043 GB, free: 15.59 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.005e-05/0.1006, allocations: 99.25 kB / 0.7044 GB, free: 15.48 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.000151/0.1008, allocations: 128.2 kB / 0.7045 GB, free: 15.35 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 1.372e-06/0.1008, allocations: 384 / 0.7045 GB, free: 15.35 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 5.373e-05/0.1008, allocations: 71.52 kB / 0.7046 GB, free: 15.28 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002718/0.1011, allocations: 76.89 kB / 0.7047 GB, free: 15.21 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008385/0.1019, allocations: 0.599 MB / 0.7053 GB, free: 14.58 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.31e-05/0.102, allocations: 100.6 kB / 0.7054 GB, free: 14.46 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 7.452e-05/0.102, allocations: 38.7 kB / 0.7054 GB, free: 14.43 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001294/0.1022, allocations: 142.2 kB / 0.7055 GB, free: 14.29 MB / 0.5418 GB
Notification: Performance of SimCode: time 8.01e-07/0.1022, allocations: 0 / 0.7055 GB, free: 14.29 MB / 0.5418 GB
Notification: Performance of Templates: time 0.005166/0.1073, allocations: 3.664 MB / 0.7091 GB, free: 10.88 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & (cd run_cvode && ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s cvode) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_gbode.sim & (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_gbode.pipe 2>&1) [Timeout 240]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_ida.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_ida.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_ida.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_ida.sim & (cd run_ida && ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s ida) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_ida.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.073589991312474]