startTime=0 stopTime=1e-08 tolerance=1e-06 numberOfIntervals=2500 stepSize=4e-12 Regular simulation: ./Physiolibrary_Physiolibrary.Chemical.Examples.AcidBase.Dev.RedCellMembrane -abortSlowSimulation -alarm=480 -lv LOG_STATS stdout | info | Using sparse solver for linear system 8, | | | | because density of 0.083 remains under threshold of 0.200. stdout | info | The maximum density for using sparse solvers can be specified | | | | using the runtime flag '<-lssMaxDensity=value>'. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. assert | warning | The following assertion has been violated at time 0.000000 | | | | blood_erythrocytes.mass >= 0.0 and blood_erythrocytes.mass <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= blood_erythrocytes.mass <= 0.0, has value: 0.330128 assert | warning | The following assertion has been violated at time 0.000000 | | | | blood_plasma.mass >= 0.0 and blood_plasma.mass <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= blood_plasma.mass <= 0.0, has value: 1.01146 assert | warning | The following assertion has been violated at time 0.000000 | | | | H2O.SelfClustering_K >= 0.0 and H2O.SelfClustering_K <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= H2O.SelfClustering_K <= 1.0, has value: 53.7264 assert | warning | The following assertion has been violated at time 0.000000 | | | | H2O_E.port_m.x_mass >= 0.0 and H2O_E.port_m.x_mass <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= H2O_E.port_m.x_mass <= 1.0, has value: 2.1006 assert | warning | The following assertion has been violated at time 0.000000 | | | | H2O_E.SelfClustering_K >= 0.0 and H2O_E.SelfClustering_K <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= H2O_E.SelfClustering_K <= 1.0, has value: 53.7264 assert | warning | The following assertion has been violated at time 0.000000 | | | | Ca.solution.n >= 0.0 and Ca.solution.n <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= Ca.solution.n <= 0.0, has value: 1.45501 assert | warning | The following assertion has been violated at time 0.000000 | | | | Ca.solution.I >= 0.0 and Ca.solution.I <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= Ca.solution.I <= 0.0, has value: 0.242226 assert | warning | The following assertion has been violated at time 0.000000 | | | | Hemoglobin.solution.n >= 0.0 and Hemoglobin.solution.n <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= Hemoglobin.solution.n <= 0.0, has value: 1.06692 assert | warning | The following assertion has been violated at time 0.000000 | | | | Hemoglobin.solution.mj >= 0.0 assert | warning | Variable violating min constraint: 0.0 <= Hemoglobin.solution.mj, has value: -0.38913 assert | warning | The following assertion has been violated at time 0.000000 | | | | Hemoglobin.solution.I >= 0.0 and Hemoglobin.solution.I <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= Hemoglobin.solution.I <= 0.0, has value: -11.6839 assert | warning | The following assertion has been violated at time 0.000000 | | | | Hemoglobin.solution.Ij >= 0.0 and Hemoglobin.solution.Ij <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= Hemoglobin.solution.Ij <= 1.0, has value: -11.7939 assert | warning | The following assertion has been violated at time 0.000000 | | | | Hemoglobin.xFreeBuffer >= 0.0 and Hemoglobin.xFreeBuffer <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= Hemoglobin.xFreeBuffer <= 1.0, has value: 20.2451 LOG_SUCCESS | info | The initialization finished successfully without homotopy method. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. stdout | warning | The default linear solver fails, the fallback solver with total pivoting is started at time 0.000000. That might raise performance issues, for more information use -lv LOG_LS. LOG_STATS | info | ### STATISTICS ### | | | | | timer | | | | | | 0.033673s reading init.xml | | | | | | 0.00304416s reading info.xml | | | | | | 0.000301446s [ 0.1%] pre-initialization | | | | | | 0.00055428s [ 0.2%] initialization | | | | | | 2.9125e-05s [ 0.0%] steps | | | | | | 0.00449322s [ 1.7%] solver (excl. callbacks) | | | | | | 0s [ 0.0%] creating output-file | | | | | | 0.0705138s [ 26.5%] event-handling | | | | | | 0.0489719s [ 18.4%] overhead | | | | | | 0.140854s [ 53.0%] simulation | | | | | | 0.265718s [100.0%] total | | | | | events | | | | | | 8 state events | | | | | | 0 time events | | | | | solver: dassl | | | | | | 188 steps taken | | | | | | 243 calls of functionODE | | | | | | 119 evaluations of jacobian | | | | | | 4 error test failures | | | | | | 0 convergence test failures | | | | | | 0.0193931s time of jacobian evaluation LOG_SUCCESS | info | The simulation finished successfully.