Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009624/0.0009624, allocations: 89.08 kB / 19.42 MB, free: 496 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001036/0.001036, allocations: 169 kB / 22.73 MB, free: 1.824 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9436/0.9436, allocations: 177.1 MB / 203.1 MB, free: 5.637 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.64/1.64, allocations: 273.5 MB / 0.5205 GB, free: 14.78 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.683e-06/1.683e-06, allocations: 0 / 0.6463 GB, free: 38.61 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.455e-05/2.623e-05, allocations: 2.312 kB / 0.6463 GB, free: 38.61 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.007914/0.00794, allocations: 11.72 MB / 0.6578 GB, free: 30.93 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.004895/0.01284, allocations: 2.485 MB / 0.6602 GB, free: 29.2 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001192/0.01403, allocations: 21.12 kB / 0.6602 GB, free: 29.2 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005755/0.0146, allocations: 300.4 kB / 0.6605 GB, free: 29.03 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001444/0.01605, allocations: 0.7809 MB / 0.6612 GB, free: 28.46 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001036/0.01708, allocations: 0.5971 MB / 0.6618 GB, free: 28.1 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002197/0.01928, allocations: 2.87 MB / 0.6646 GB, free: 26.56 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002502/0.02178, allocations: 3.224 MB / 0.6678 GB, free: 24.64 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003015/0.0248, allocations: 2.558 MB / 0.6703 GB, free: 23.58 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.003188/0.02799, allocations: 1.98 MB / 0.6722 GB, free: 23.05 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0008488/0.02883, allocations: 424 kB / 0.6726 GB, free: 23.05 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0007167/0.02955, allocations: 430.7 kB / 0.673 GB, free: 23.05 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0005495/0.0301, allocations: 0.9326 MB / 0.6739 GB, free: 22.45 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001529/0.03163, allocations: 1.296 MB / 0.6752 GB, free: 21.84 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002989/0.03462, allocations: 2.6 MB / 0.6777 GB, free: 20.57 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 5.551e-06/0.03462, allocations: 0 / 0.6777 GB, free: 20.57 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.984e-06/0.03463, allocations: 0.7031 kB / 0.6777 GB, free: 20.57 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 6.021e-05/0.03469, allocations: 0 / 0.6777 GB, free: 20.57 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.005221/0.03991, allocations: 2.893 MB / 0.6806 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.987e-05/0.03996, allocations: 13.77 kB / 0.6806 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007526/0.04071, allocations: 376.9 kB / 0.6809 GB, free: 18.34 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001362/0.04207, allocations: 1.107 MB / 0.682 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.665e-05/0.04215, allocations: 131.6 kB / 0.6822 GB, free: 17.39 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003244/0.04247, allocations: 208 kB / 0.6823 GB, free: 17.32 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003431/0.0459, allocations: 3.04 MB / 0.6853 GB, free: 15.4 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.285e-05/0.04596, allocations: 16.45 kB / 0.6853 GB, free: 15.39 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002123/0.04617, allocations: 77.86 kB / 0.6854 GB, free: 15.33 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.814e-05/0.04621, allocations: 41.81 kB / 0.6854 GB, free: 15.33 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002856/0.04906, allocations: 2.002 MB / 0.6874 GB, free: 14.61 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.009835/0.0589, allocations: 7.12 MB / 0.6944 GB, free: 8.227 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001458/0.06036, allocations: 1.079 MB / 0.6954 GB, free: 7.117 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009421/0.0613, allocations: 0.7382 MB / 0.6961 GB, free: 6.352 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.694e-05/0.06136, allocations: 37.98 kB / 0.6962 GB, free: 6.316 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001434/0.0628, allocations: 1.595 MB / 0.6977 GB, free: 4.625 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003971/0.06677, allocations: 1.844 MB / 0.6995 GB, free: 2.82 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 7.845e-06/0.06678, allocations: 0 / 0.6995 GB, free: 2.82 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.008379/0.07516, allocations: 5.51 MB / 0.7049 GB, free: 13.18 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001452/0.0753, allocations: 405.8 kB / 0.7053 GB, free: 12.7 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000802/0.0761, allocations: 0.8736 MB / 0.7061 GB, free: 11.8 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001794/0.07628, allocations: 77.64 kB / 0.7062 GB, free: 11.71 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004196/0.0767, allocations: 0.7468 MB / 0.707 GB, free: 10.96 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0007328/0.07743, allocations: 0.7166 MB / 0.7077 GB, free: 10.23 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007165/0.07815, allocations: 0.5877 MB / 0.7082 GB, free: 9.637 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001058/0.07826, allocations: 476.8 kB / 0.7087 GB, free: 9.168 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001275/0.07953, allocations: 0.9879 MB / 0.7096 GB, free: 8.121 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001525/0.08106, allocations: 1.644 MB / 0.7112 GB, free: 6.129 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004247/0.0853, allocations: 3.378 MB / 0.7145 GB, free: 2.387 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.067e-06/0.08531, allocations: 0 / 0.7145 GB, free: 2.387 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.004083/0.0894, allocations: 3.06 MB / 0.7175 GB, free: 15.21 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001414/0.08954, allocations: 263.3 kB / 0.7178 GB, free: 14.89 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.944e-05/0.08956, allocations: 12 kB / 0.7178 GB, free: 14.88 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.835e-05/0.0896, allocations: 24 kB / 0.7178 GB, free: 14.86 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002005/0.0916, allocations: 0.8346 MB / 0.7186 GB, free: 14.02 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.533e-05/0.09163, allocations: 27.94 kB / 0.7187 GB, free: 14 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001374/0.093, allocations: 99.94 kB / 0.7188 GB, free: 13.9 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002289/0.09323, allocations: 215.7 kB / 0.719 GB, free: 13.69 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0009429/0.09417, allocations: 0.5769 MB / 0.7195 GB, free: 13.11 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004646/0.09464, allocations: 227 kB / 0.7197 GB, free: 12.88 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003909/0.09855, allocations: 2.726 MB / 0.7224 GB, free: 10.17 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.247e-05/0.09856, allocations: 16 kB / 0.7224 GB, free: 10.16 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.069e-06/0.09856, allocations: 0 / 0.7224 GB, free: 10.16 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.42e-05/0.09858, allocations: 15.95 kB / 0.7224 GB, free: 10.14 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004969/0.1035, allocations: 3.645 MB / 0.726 GB, free: 6.398 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.238e-06/0.1036, allocations: 4 kB / 0.726 GB, free: 6.395 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001441/0.105, allocations: 439.3 kB / 0.7264 GB, free: 5.965 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.025e-05/0.105, allocations: 8 kB / 0.7264 GB, free: 5.957 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001583/0.1052, allocations: 111.1 kB / 0.7265 GB, free: 5.852 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.805e-06/0.1052, allocations: 8 kB / 0.7265 GB, free: 5.844 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.994e-06/0.1052, allocations: 0 / 0.7265 GB, free: 5.844 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004327/0.1095, allocations: 3.11 MB / 0.7296 GB, free: 2.633 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007453/0.1102, allocations: 386.6 kB / 0.7299 GB, free: 2.254 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002584/0.1105, allocations: 59.94 kB / 0.73 GB, free: 2.195 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008908/0.1114, allocations: 75.95 kB / 0.7301 GB, free: 2.121 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000251/0.1116, allocations: 169.7 kB / 0.7302 GB, free: 1.953 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001504/0.1118, allocations: 111.8 kB / 0.7303 GB, free: 1.844 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.000541/0.1123, allocations: 0.5959 MB / 0.7309 GB, free: 1.238 MB / 0.5574 GB Notification: Performance of sort global known variables: time 1.9e-07/0.1123, allocations: 3.938 kB / 0.7309 GB, free: 1.234 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001492/0.1138, allocations: 0.6289 MB / 0.7315 GB, free: 0.6055 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002774/0.1141, allocations: 219.7 kB / 0.7318 GB, free: 400 kB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.003295/0.1174, allocations: 2.677 MB / 0.7344 GB, free: 13.52 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 3.527e-06/0.1174, allocations: 0 / 0.7344 GB, free: 13.52 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001465/0.1189, allocations: 1.195 MB / 0.7355 GB, free: 12.25 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001625/0.1205, allocations: 0.5646 MB / 0.7361 GB, free: 11.71 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006686/0.1272, allocations: 5.144 MB / 0.7411 GB, free: 6.66 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002306/0.1274, allocations: 329.7 kB / 0.7414 GB, free: 6.312 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001673/0.1291, allocations: 0.4906 MB / 0.7419 GB, free: 5.949 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001234/0.1303, allocations: 324 kB / 0.7422 GB, free: 5.633 MB / 0.573 GB Notification: Performance of SimCode: time 2.174e-06/0.1303, allocations: 0 / 0.7422 GB, free: 5.633 MB / 0.573 GB Notification: Performance of Templates: time 0.04324/0.1736, allocations: 41.58 MB / 0.7828 GB, free: 12.98 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_cvode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_cvode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_cvode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_cvode.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS -s cvode > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_cvode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS -s gbode -gbm=radauIIA3 > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_gbode.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.903164880815893]