Environment - simulationEnvironment:
startTime=0
stopTime=864000
tolerance=1e-09
numberOfIntervals=86400
stepSize=10
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS -s gbode -gbm=radauIIA3
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_lower.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_lower.periodicDose.absorptionLumen.M, has value: -2.38095e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_lower.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_lower.periodicDose.variableDose.TotalCumulativeMass, has value: -2.36606e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_1C_Lithium_upper.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium_upper.periodicDose.absorptionLumen.M, has value: -1.42857e-10"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass, has value: -1.41964e-10"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_1C_Lithium.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium.periodicDose.absorptionLumen.M, has value: -9.52381e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 659.918833
|                 | |       | ((pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass, has value: -9.46425e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:9:3-9:108:writable]
|                 | |       | The following assertion has been violated at time 173460.000000
|                 | |       | ((pK_lower.periodicDose.absorptionLumen.C >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= pK_lower.periodicDose.absorptionLumen.C, has value: -1.31569e-07"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:9:3-9:108:writable]
|                 | |       | The following assertion has been violated at time 173460.000000
|                 | |       | ((pK_1C_Lithium_upper.periodicDose.absorptionLumen.C >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= pK_1C_Lithium_upper.periodicDose.absorptionLumen.C, has value: -7.89414e-07"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:9:3-9:108:writable]
|                 | |       | The following assertion has been violated at time 173460.000000
|                 | |       | ((pK_1C_Lithium.periodicDose.absorptionLumen.C >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= pK_1C_Lithium.periodicDose.absorptionLumen.C, has value: -5.26276e-07"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |   0.00232173s          reading init.xml
|                 | |       | | |  0.000230012s          reading info.xml
|                 | |       | | |    0.0001221s [  0.1%] pre-initialization
|                 | |       | | |   6.2938e-05s [  0.1%] initialization
|                 | |       | | |   1.3756e-05s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |   0.00239628s [  2.2%] event-handling
|                 | |       | | |   0.00419948s [  3.8%] overhead
|                 | |       | | |     0.102646s [ 93.8%] simulation
|                 | |       | | |      0.10944s [100.0%] total
|                 | |       | | events
|                 | |       | | |   139 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |  1206 steps taken
|                 | |       | | |  5295 calls of functionODE
|                 | |       | | |   150 evaluations of jacobian
|                 | |       | | |   134 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 7.7659e-05s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.