Environment - simulationEnvironment:
startTime=0
stopTime=7200
tolerance=1e-06
numberOfIntervals=7200
stepSize=1
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): ./Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue -abortSlowSimulation -alarm=240  -lv LOG_STATS -s gbode -gbm=radauIIA3
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:8:3-8:92:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((tissue.C >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= tissue.C, has value: -3.93537e-09"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:9:3-9:69:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((tissue.CB >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= tissue.CB, has value: -3.93537e-09"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:13:3-13:85:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((tissue.freeBloodConc >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= tissue.freeBloodConc, has value: -3.93537e-09"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:15:3-15:33:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((tissue.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= tissue.M, has value: -1.57415e-10"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Pharmacokinetic/ClearanceDrivenElimination.mo:5:3-5:115:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((kidneyElim.C >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= kidneyElim.C, has value: -3.93537e-09"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |   0.00129905s          reading init.xml
|                 | |       | | |  0.000110077s          reading info.xml
|                 | |       | | |  0.000166693s [  2.0%] pre-initialization
|                 | |       | | |   4.7179e-05s [  0.6%] initialization
|                 | |       | | |    8.906e-06s [  0.1%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |   7.4258e-05s [  0.9%] event-handling
|                 | |       | | |  0.000350347s [  4.1%] overhead
|                 | |       | | |   0.00785356s [ 92.4%] simulation
|                 | |       | | |   0.00850094s [100.0%] total
|                 | |       | | events
|                 | |       | | |     5 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |    59 steps taken
|                 | |       | | |   218 calls of functionODE
|                 | |       | | |     7 evaluations of jacobian
|                 | |       | | |     1 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 4.821e-06s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.