Environment - simulationEnvironment:
startTime=0
stopTime=3600
tolerance=1e-06
numberOfIntervals=3600
stepSize=1
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): ./Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody -abortSlowSimulation -alarm=240  -lv LOG_STATS -s gbode -gbm=radauIIA3
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:9:3-9:69:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((venous.CB >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= venous.CB, has value: -5.71934e-09"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:11:3-11:77:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((venous.freeTissueConc >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= venous.freeTissueConc, has value: -5.71934e-09"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialBloodTissueCompartment.mo:15:3-15:33:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((venous.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= venous.M, has value: -2.28774e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Pharmacokinetic/FlowGround.mo:4:3-4:109:writable]
|                 | |       | The following assertion has been violated at time 61.000000
|                 | |       | ((flowGround.MassConcentration >= -1e-9)) --> "Variable violating min constraint: -1e-9 <= flowGround.MassConcentration, has value: -5.71934e-09"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |   0.00293641s          reading init.xml
|                 | |       | | |  0.000264147s          reading info.xml
|                 | |       | | |   0.00013288s [  1.5%] pre-initialization
|                 | |       | | |   5.4032e-05s [  0.6%] initialization
|                 | |       | | |    5.751e-06s [  0.1%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |  0.000151805s [  1.8%] event-handling
|                 | |       | | |  0.000166443s [  1.9%] overhead
|                 | |       | | |   0.00810007s [ 94.1%] simulation
|                 | |       | | |   0.00861099s [100.0%] total
|                 | |       | | events
|                 | |       | | |    78 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |   254 steps taken
|                 | |       | | |  1154 calls of functionODE
|                 | |       | | |    79 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0.000616154s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.