Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009636/0.0009636, allocations: 88.23 kB / 19.42 MB, free: 496 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001228/0.001228, allocations: 169 kB / 22.73 MB, free: 1.824 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9473/0.9473, allocations: 177.1 MB / 203.1 MB, free: 5.613 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.646/1.646, allocations: 273.5 MB / 0.5205 GB, free: 14.88 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.325e-06/2.325e-06, allocations: 0 / 0.6464 GB, free: 38.64 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.382e-05/2.614e-05, allocations: 2.312 kB / 0.6464 GB, free: 38.63 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.004382/0.004408, allocations: 5.717 MB / 0.652 GB, free: 34.93 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.0021/0.006509, allocations: 1.305 MB / 0.6533 GB, free: 34.02 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003843/0.006893, allocations: 8.812 kB / 0.6533 GB, free: 34.02 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002464/0.007139, allocations: 129.5 kB / 0.6534 GB, free: 33.95 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0005423/0.007682, allocations: 363.3 kB / 0.6538 GB, free: 33.68 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004763/0.008158, allocations: 264.5 kB / 0.654 GB, free: 33.51 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001039/0.009197, allocations: 1.276 MB / 0.6553 GB, free: 32.8 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003111/0.009508, allocations: 212.4 kB / 0.6555 GB, free: 32.67 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0007755/0.01028, allocations: 0.6499 MB / 0.6561 GB, free: 32.39 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006738/0.01096, allocations: 397.1 kB / 0.6565 GB, free: 32.26 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001605/0.01112, allocations: 109.6 kB / 0.6566 GB, free: 32.26 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001559/0.01127, allocations: 110 kB / 0.6567 GB, free: 32.26 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 8.762e-05/0.01136, allocations: 208.7 kB / 0.6569 GB, free: 32.11 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003687/0.01173, allocations: 387.1 kB / 0.6573 GB, free: 31.94 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0006773/0.01241, allocations: 0.739 MB / 0.658 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.819e-06/0.01241, allocations: 0 / 0.658 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.493e-06/0.01241, allocations: 1.375 kB / 0.658 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 3.405e-05/0.01245, allocations: 1.125 kB / 0.658 GB, free: 31.55 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.00157/0.01402, allocations: 1.476 MB / 0.6594 GB, free: 30.41 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.171e-05/0.01406, allocations: 12.7 kB / 0.6594 GB, free: 30.41 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002187/0.01428, allocations: 158.2 kB / 0.6596 GB, free: 30.34 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004943/0.01477, allocations: 444.4 kB / 0.66 GB, free: 30 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.623e-05/0.01481, allocations: 51.06 kB / 0.6601 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 9.151e-05/0.0149, allocations: 78.73 kB / 0.6601 GB, free: 29.95 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007794/0.01568, allocations: 0.7235 MB / 0.6608 GB, free: 29.54 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.947e-05/0.01571, allocations: 10.7 kB / 0.6609 GB, free: 29.54 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.886e-05/0.01575, allocations: 28.41 kB / 0.6609 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.645e-05/0.01576, allocations: 15.44 kB / 0.6609 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005389/0.0163, allocations: 0.4912 MB / 0.6614 GB, free: 29.27 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001943/0.01825, allocations: 1.964 MB / 0.6633 GB, free: 27.97 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0005118/0.01876, allocations: 0.5085 MB / 0.6638 GB, free: 27.67 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002561/0.01901, allocations: 335.5 kB / 0.6641 GB, free: 27.44 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 2.755e-05/0.01904, allocations: 13.25 kB / 0.6641 GB, free: 27.44 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005618/0.0196, allocations: 0.8947 MB / 0.665 GB, free: 26.73 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.284e-06/0.01961, allocations: 0 / 0.665 GB, free: 26.73 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002535/0.02214, allocations: 2.633 MB / 0.6676 GB, free: 25.07 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001245/0.02227, allocations: 0.5417 MB / 0.6681 GB, free: 24.43 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004191/0.02268, allocations: 0.5158 MB / 0.6686 GB, free: 24.16 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.29e-05/0.02274, allocations: 58.45 kB / 0.6687 GB, free: 24.11 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001678/0.02291, allocations: 375.7 kB / 0.669 GB, free: 23.8 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.00017/0.02308, allocations: 346.4 kB / 0.6693 GB, free: 23.53 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001957/0.02327, allocations: 193.4 kB / 0.6695 GB, free: 23.43 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001199/0.02339, allocations: 0.5651 MB / 0.6701 GB, free: 22.9 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003583/0.02375, allocations: 458.9 kB / 0.6705 GB, free: 22.55 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004498/0.0242, allocations: 0.8317 MB / 0.6713 GB, free: 21.71 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00106/0.02526, allocations: 1.527 MB / 0.6728 GB, free: 20.33 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.059e-05/0.02527, allocations: 3.094 kB / 0.6728 GB, free: 20.33 MB / 0.5262 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.001228/0.0265, allocations: 1.358 MB / 0.6742 GB, free: 19.45 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 7.633e-05/0.02657, allocations: 265.6 kB / 0.6744 GB, free: 19.16 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.434e-05/0.02659, allocations: 11.09 kB / 0.6744 GB, free: 19.16 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.815e-05/0.02662, allocations: 12.75 kB / 0.6744 GB, free: 19.16 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005521/0.02717, allocations: 245.6 kB / 0.6747 GB, free: 19.14 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.071e-05/0.02719, allocations: 20.52 kB / 0.6747 GB, free: 19.13 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003878/0.02758, allocations: 60.28 kB / 0.6747 GB, free: 19.11 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.335e-05/0.02763, allocations: 45.88 kB / 0.6748 GB, free: 19.1 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0004575/0.02809, allocations: 0.5436 MB / 0.6753 GB, free: 18.64 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001198/0.02821, allocations: 128.6 kB / 0.6754 GB, free: 18.59 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.046e-05/0.0283, allocations: 84.69 kB / 0.6755 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.935e-06/0.02831, allocations: 8.5 kB / 0.6755 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.622e-05/0.02832, allocations: 2.109 kB / 0.6755 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.075e-05/0.02833, allocations: 4.219 kB / 0.6755 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001917/0.03025, allocations: 1.892 MB / 0.6774 GB, free: 17.4 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.765e-06/0.03026, allocations: 0 / 0.6774 GB, free: 17.4 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004889/0.03075, allocations: 163.4 kB / 0.6775 GB, free: 17.38 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.408e-06/0.03076, allocations: 6.781 kB / 0.6775 GB, free: 17.38 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.88e-05/0.03082, allocations: 35.58 kB / 0.6776 GB, free: 17.36 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.04e-06/0.03082, allocations: 3.531 kB / 0.6776 GB, free: 17.36 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.204e-06/0.03082, allocations: 3.984 kB / 0.6776 GB, free: 17.36 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001437/0.03226, allocations: 1.717 MB / 0.6793 GB, free: 16.3 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 9.292e-05/0.03235, allocations: 74.16 kB / 0.6793 GB, free: 16.25 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001102/0.03246, allocations: 40.39 kB / 0.6794 GB, free: 16.23 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002401/0.0327, allocations: 46.41 kB / 0.6794 GB, free: 16.22 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001662/0.03287, allocations: 86.55 kB / 0.6795 GB, free: 16.2 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.408e-05/0.03291, allocations: 35.2 kB / 0.6795 GB, free: 16.19 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002798/0.03319, allocations: 341.5 kB / 0.6799 GB, free: 16.02 MB / 0.5262 GB Notification: Performance of sort global known variables: time 6e-08/0.03319, allocations: 0 / 0.6799 GB, free: 16.02 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0005604/0.03375, allocations: 256.5 kB / 0.6801 GB, free: 16 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001745/0.03393, allocations: 190.7 kB / 0.6803 GB, free: 15.87 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001011/0.03494, allocations: 1.501 MB / 0.6817 GB, free: 14.69 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.154e-06/0.03494, allocations: 0.5625 kB / 0.6817 GB, free: 14.69 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0005085/0.03545, allocations: 0.8163 MB / 0.6825 GB, free: 14.04 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007486/0.0362, allocations: 264.7 kB / 0.6828 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00363/0.03983, allocations: 2.357 MB / 0.6851 GB, free: 12.48 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001394/0.03997, allocations: 178.2 kB / 0.6853 GB, free: 12.4 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0003225/0.04029, allocations: 84.09 kB / 0.6853 GB, free: 12.39 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001447/0.04043, allocations: 64.75 kB / 0.6854 GB, free: 12.38 MB / 0.5262 GB Notification: Performance of SimCode: time 1.062e-06/0.04044, allocations: 4 kB / 0.6854 GB, free: 12.37 MB / 0.5262 GB Notification: Performance of Templates: time 0.01562/0.05606, allocations: 13.43 MB / 0.6985 GB, free: 3.164 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_cvode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_cvode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_cvode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_cvode.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS -s cvode > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_cvode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS -s gbode -gbm=radauIIA3 > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_gbode.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.24140257597901]