Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001164/0.001164, allocations: 89.08 kB / 19.42 MB, free: 496 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001711/0.001711, allocations: 169.3 kB / 22.72 MB, free: 1.828 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9692/0.9692, allocations: 177.1 MB / 203.1 MB, free: 5.645 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.638/1.638, allocations: 273.5 MB / 0.5205 GB, free: 14.85 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.485e-06/2.485e-06, allocations: 0 / 0.6462 GB, free: 38.69 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.102e-05/3.35e-05, allocations: 3.719 kB / 0.6462 GB, free: 38.68 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.002597/0.00263, allocations: 1.296 MB / 0.6475 GB, free: 37.83 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.0002477/0.002878, allocations: 53.3 kB / 0.6475 GB, free: 37.8 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 4.633e-05/0.002924, allocations: 0 / 0.6475 GB, free: 37.8 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 8.934e-05/0.003013, allocations: 5.969 kB / 0.6475 GB, free: 37.79 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 4.295e-05/0.003056, allocations: 2.625 kB / 0.6475 GB, free: 37.79 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0001769/0.003233, allocations: 24.41 kB / 0.6476 GB, free: 37.78 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0001607/0.003394, allocations: 147 kB / 0.6477 GB, free: 37.75 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 4.342e-05/0.003438, allocations: 1.625 kB / 0.6477 GB, free: 37.75 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001149/0.003552, allocations: 78.47 kB / 0.6478 GB, free: 37.73 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0001417/0.003694, allocations: 78.23 kB / 0.6479 GB, free: 37.71 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 3.569e-05/0.00373, allocations: 9.312 kB / 0.6479 GB, free: 37.71 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 2.919e-05/0.003759, allocations: 8.812 kB / 0.6479 GB, free: 37.71 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 3.813e-05/0.003797, allocations: 26.06 kB / 0.6479 GB, free: 37.7 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 5.071e-05/0.003848, allocations: 36.61 kB / 0.6479 GB, free: 37.69 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0001266/0.003974, allocations: 95.03 kB / 0.648 GB, free: 37.66 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.116e-06/0.003977, allocations: 0 / 0.648 GB, free: 37.66 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.042e-06/0.003979, allocations: 0 / 0.648 GB, free: 37.66 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 4.769e-06/0.003983, allocations: 0 / 0.648 GB, free: 37.66 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 12 * Number of variables: 12 Notification: Performance of Generate backend data structure: time 0.0009824/0.004966, allocations: 0.5956 MB / 0.6486 GB, free: 37.28 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.896e-05/0.005005, allocations: 10.25 kB / 0.6486 GB, free: 37.28 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 5.561e-05/0.00506, allocations: 9.906 kB / 0.6486 GB, free: 37.27 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001279/0.005188, allocations: 134.5 kB / 0.6488 GB, free: 37.13 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.071e-05/0.005199, allocations: 1.906 kB / 0.6488 GB, free: 37.13 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 1.933e-05/0.005218, allocations: 10.06 kB / 0.6488 GB, free: 37.13 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002932/0.005512, allocations: 157.5 kB / 0.6489 GB, free: 37.05 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 8.436e-06/0.00552, allocations: 192 / 0.6489 GB, free: 37.05 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.552e-05/0.005535, allocations: 1.719 kB / 0.6489 GB, free: 37.05 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.827e-06/0.005544, allocations: 1.938 kB / 0.6489 GB, free: 37.05 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 9.507e-05/0.005639, allocations: 35.7 kB / 0.649 GB, free: 37.04 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.000257/0.005896, allocations: 279.4 kB / 0.6492 GB, free: 36.75 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 8.815e-05/0.005985, allocations: 39.14 kB / 0.6493 GB, free: 36.71 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 8.777e-05/0.006072, allocations: 43.38 kB / 0.6493 GB, free: 36.69 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 1.731e-05/0.00609, allocations: 2.594 kB / 0.6493 GB, free: 36.69 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.012e-05/0.00611, allocations: 39.3 kB / 0.6493 GB, free: 36.64 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=11): time 1.683e-06/0.006111, allocations: 0 / 0.6493 GB, free: 36.64 MB / 0.5262 GB Notification: Performance of matching and sorting (n=11): time 0.0003102/0.006422, allocations: 109.1 kB / 0.6494 GB, free: 36.59 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 2.555e-05/0.006447, allocations: 53.59 kB / 0.6495 GB, free: 36.53 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.012e-05/0.006517, allocations: 171.4 kB / 0.6497 GB, free: 36.36 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 1.237e-05/0.00653, allocations: 28.8 kB / 0.6497 GB, free: 36.33 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 4.699e-05/0.006577, allocations: 141 kB / 0.6498 GB, free: 36.19 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 2.287e-05/0.0066, allocations: 31.2 kB / 0.6498 GB, free: 36.16 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 4.749e-05/0.006647, allocations: 41.14 kB / 0.6499 GB, free: 36.13 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 7.262e-05/0.00672, allocations: 0.4903 MB / 0.6504 GB, free: 35.63 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 5.554e-05/0.006775, allocations: 17.58 kB / 0.6504 GB, free: 35.63 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 5.874e-05/0.006834, allocations: 39.84 kB / 0.6504 GB, free: 35.6 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0001093/0.006943, allocations: 56.95 kB / 0.6505 GB, free: 35.57 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.525e-06/0.006946, allocations: 3.125 kB / 0.6505 GB, free: 35.57 MB / 0.5262 GB Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001753/0.007121, allocations: 91.11 kB / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 1.373e-05/0.007135, allocations: 6.188 kB / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.699e-06/0.007139, allocations: 3.938 kB / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.322e-05/0.007153, allocations: 2.031 kB / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000226/0.007379, allocations: 75.62 kB / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.711e-06/0.007384, allocations: 0 / 0.6506 GB, free: 35.52 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000156/0.00754, allocations: 58.7 kB / 0.6507 GB, free: 35.51 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.265e-05/0.007553, allocations: 2.219 kB / 0.6507 GB, free: 35.51 MB / 0.5262 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 2 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (12): * Single equations (assignments): 12 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 5.903e-05/0.007612, allocations: 168.9 kB / 0.6509 GB, free: 35.34 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 2.67e-05/0.007639, allocations: 11.61 kB / 0.6509 GB, free: 35.34 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002615/0.0079, allocations: 178.4 kB / 0.651 GB, free: 35.25 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.956e-06/0.007903, allocations: 7.469 kB / 0.6511 GB, free: 35.25 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.466e-06/0.007907, allocations: 0 / 0.6511 GB, free: 35.25 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.085e-06/0.00791, allocations: 0 / 0.6511 GB, free: 35.25 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 9.667e-05/0.008007, allocations: 154.3 kB / 0.6512 GB, free: 35.09 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.463e-06/0.008008, allocations: 0 / 0.6512 GB, free: 35.09 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002075/0.008215, allocations: 89.05 kB / 0.6513 GB, free: 35.08 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.675e-06/0.008218, allocations: 2.156 kB / 0.6513 GB, free: 35.08 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.195e-05/0.00823, allocations: 4.594 kB / 0.6513 GB, free: 35.08 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.173e-06/0.008231, allocations: 2.188 kB / 0.6513 GB, free: 35.08 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.624e-06/0.008233, allocations: 5.625 kB / 0.6513 GB, free: 35.07 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001915/0.008424, allocations: 176.1 kB / 0.6515 GB, free: 34.96 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 1.175e-05/0.008436, allocations: 13.41 kB / 0.6515 GB, free: 34.95 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.648e-05/0.008453, allocations: 9.922 kB / 0.6515 GB, free: 34.95 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001456/0.008598, allocations: 56.62 kB / 0.6515 GB, free: 34.95 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 6.427e-05/0.008663, allocations: 27.72 kB / 0.6516 GB, free: 34.93 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.071e-05/0.008673, allocations: 9.047 kB / 0.6516 GB, free: 34.93 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 2.63e-05/0.0087, allocations: 135 kB / 0.6517 GB, free: 34.81 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.0087, allocations: 0 / 0.6517 GB, free: 34.81 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0001437/0.008843, allocations: 31.16 kB / 0.6517 GB, free: 34.8 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (21): * Single equations (assignments): 21 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 6.947e-05/0.008913, allocations: 100.4 kB / 0.6518 GB, free: 34.71 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0001792/0.009092, allocations: 68.56 kB / 0.6519 GB, free: 34.7 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.042e-06/0.009093, allocations: 2.281 kB / 0.6519 GB, free: 34.7 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 8.871e-05/0.009182, allocations: 72.72 kB / 0.652 GB, free: 34.67 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000165/0.009347, allocations: 17.5 kB / 0.652 GB, free: 34.66 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005538/0.0099, allocations: 252.2 kB / 0.6522 GB, free: 34.48 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 2.9e-05/0.009929, allocations: 66.34 kB / 0.6523 GB, free: 34.41 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 7.318e-05/0.01, allocations: 34.59 kB / 0.6523 GB, free: 34.41 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 9.165e-05/0.01009, allocations: 22.28 kB / 0.6523 GB, free: 34.39 MB / 0.5262 GB Notification: Performance of SimCode: time 4.9e-07/0.01009, allocations: 0 / 0.6523 GB, free: 34.39 MB / 0.5262 GB Notification: Performance of Templates: time 0.00451/0.0146, allocations: 2.88 MB / 0.6552 GB, free: 34.16 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_cvode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_cvode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_cvode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_cvode.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS -s cvode > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_cvode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -lv LOG_STATS -s gbode -gbm=radauIIA3 > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_gbode.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.1905762769747525]