Environment - simulationEnvironment:
startTime=0
stopTime=5
tolerance=1e-12
numberOfIntervals=1000
stepSize=0.005
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): (cd run_gbode && ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3)
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.050000
|                 | |       | ((SusceptibleCells.state >= 0.0)) --> "Variable violating min constraint: 0.0 <= SusceptibleCells.state, has value: -1.79035e-14"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |            0s          reading init.xml
|                 | |       | | |            0s          reading info.xml
|                 | |       | | |   4.9934e-05s [  0.6%] pre-initialization
|                 | |       | | |   3.0738e-05s [  0.4%] initialization
|                 | |       | | |            0s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |  0.000119048s [  1.4%] creating output-file
|                 | |       | | |            0s [  0.0%] event-handling
|                 | |       | | |            0s [  0.0%] overhead
|                 | |       | | |   0.00828786s [ 97.6%] simulation
|                 | |       | | |   0.00848758s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |  3490 steps taken
|                 | |       | | | 22211 calls of functionODE
|                 | |       | | |    43 evaluations of jacobian
|                 | |       | | |     3 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.