Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001337/0.001337, allocations: 104.3 kB / 19.7 MB, free: 2.156 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001489/0.001489, allocations: 213 kB / 22.99 MB, free: 4.98 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.447/1.447, allocations: 230.6 MB / 256.8 MB, free: 7.816 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1379/0.1379, allocations: 23.88 MB / 337.1 MB, free: 11 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002018/0.002018, allocations: 67.91 kB / 472.4 MB, free: 7.027 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2991/0.3012, allocations: 59.85 MB / 0.5198 GB, free: 9.832 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1256/0.4268, allocations: 74.23 MB / 0.5922 GB, free: 15.54 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5525/0.9793, allocations: 191.2 MB / 0.779 GB, free: 16.1 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01517/0.9944, allocations: 234.8 kB / 0.7792 GB, free: 16.1 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.0149/1.009, allocations: 4.45 MB / 0.7836 GB, free: 16.07 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.05261/1.062, allocations: 17.86 MB / 0.801 GB, free: 15.55 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.07683/1.139, allocations: 32.66 MB / 0.8329 GB, free: 0 / 0.5606 GB
Notification: Performance of NFFlatten.flatten: time 0.09536/1.234, allocations: 89.11 MB / 0.9199 GB, free: 2.219 MB / 0.6387 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.08059/1.315, allocations: 52.3 MB / 0.971 GB, free: 15.8 MB / 0.7012 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.735/2.05, allocations: 56.57 MB / 1.026 GB, free: 44.13 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.08474/2.135, allocations: 52.04 MB / 1.077 GB, free: 41.29 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.03978/2.174, allocations: 12.2 MB / 1.089 GB, free: 41.29 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1106/2.285, allocations: 34.5 MB / 1.123 GB, free: 32.89 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.04744/2.332, allocations: 24.03 MB / 1.146 GB, free: 13.34 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.1192/2.451, allocations: 38.98 MB / 1.184 GB, free: 12.91 MB / 0.7325 GB
Notification: Performance of NFConvertDAE.convert: time 0.9606/3.412, allocations: 159.6 MB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of FrontEnd - DAE generated: time 6.913e-06/3.412, allocations: 2.234 kB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of FrontEnd: time 1.663e-06/3.412, allocations: 2.344 kB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of Transformations before backend: time 0.00314/3.415, allocations: 2.219 kB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2653/3.68, allocations: 71.68 MB / 1.41 GB, free: 87.91 MB / 0.842 GB
Notification: Performance of prepare preOptimizeDAE: time 4.322e-05/3.681, allocations: 11.91 kB / 1.41 GB, free: 87.91 MB / 0.842 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08641/3.767, allocations: 11.94 MB / 1.422 GB, free: 84.86 MB / 0.842 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.09934/3.866, allocations: 42.6 MB / 1.463 GB, free: 77.79 MB / 0.842 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005454/3.872, allocations: 9.241 MB / 1.472 GB, free: 69.28 MB / 0.842 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03144/3.903, allocations: 4.599 MB / 1.477 GB, free: 67.62 MB / 0.842 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2951/4.198, allocations: 112.9 MB / 1.587 GB, free: 2.891 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002642/4.201, allocations: 32.31 kB / 1.587 GB, free: 2.875 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03524/4.236, allocations: 1.758 MB / 1.589 GB, free: 1.117 MB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.00101/4.237, allocations: 1.059 MB / 1.59 GB, free: 60 kB / 0.8889 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.6653/4.902, allocations: 153 MB / 1.739 GB, free: 352.2 MB / 0.9514 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.242/6.145, allocations: 389 MB / 2.119 GB, free: 317.2 MB / 0.9514 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.183/8.328, allocations: 0.6474 GB / 2.767 GB, free: 258 MB / 0.9514 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.1038/8.432, allocations: 60.05 MB / 2.825 GB, free: 206 MB / 0.9514 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.8951/9.327, allocations: 254.6 MB / 3.074 GB, free: 314.2 MB / 0.9514 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000245/9.327, allocations: 340 kB / 3.074 GB, free: 314.2 MB / 0.9514 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09507/9.422, allocations: 29.13 MB / 3.103 GB, free: 314 MB / 0.9514 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001592/9.422, allocations: 0 / 3.103 GB, free: 314 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=3387): time 2.579/12, allocations: 423.7 MB / 3.516 GB, free: 314.1 MB / 0.9514 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003069/12, allocations: 452.5 kB / 3.517 GB, free: 313.9 MB / 0.9514 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.05085/12.05, allocations: 30.72 MB / 3.547 GB, free: 303.5 MB / 0.9514 GB
Notification: Performance of collectPreVariables (initialization): time 0.01211/12.06, allocations: 0.5745 MB / 3.547 GB, free: 303 MB / 0.9514 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01459/12.08, allocations: 21.63 MB / 3.569 GB, free: 290.6 MB / 0.9514 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02106/12.1, allocations: 12.42 MB / 3.581 GB, free: 280.9 MB / 0.9514 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04563/12.15, allocations: 9.928 MB / 3.59 GB, free: 277.2 MB / 0.9514 GB
Notification: Performance of setup shared object (initialization): time 3.951e-05/12.15, allocations: 301.1 kB / 3.591 GB, free: 276.9 MB / 0.9514 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0654/12.21, allocations: 39.05 MB / 3.629 GB, free: 260.6 MB / 0.9514 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.07877/12.29, allocations: 53.24 MB / 3.681 GB, free: 220.2 MB / 0.9514 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1449/12.43, allocations: 96.37 MB / 3.775 GB, free: 118.4 MB / 0.9514 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005271/12.44, allocations: 128 kB / 3.775 GB, free: 118.3 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.77/14.21, allocations: 257.1 MB / 4.026 GB, free: 245 MB / 0.9514 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0006804/14.21, allocations: 196.4 kB / 4.026 GB, free: 245 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000817/14.21, allocations: 448 kB / 4.027 GB, free: 245 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1863/14.39, allocations: 73.71 MB / 4.099 GB, free: 196.6 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05511/14.45, allocations: 11.18 MB / 4.11 GB, free: 186.1 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.048/15.5, allocations: 309.6 MB / 4.412 GB, free: 232.1 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05872/15.56, allocations: 2.475 MB / 4.414 GB, free: 231.4 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0164/15.57, allocations: 2.801 MB / 4.417 GB, free: 231 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.04699/15.62, allocations: 18.35 MB / 4.435 GB, free: 223.3 MB / 0.9514 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02154/15.64, allocations: 3.172 MB / 4.438 GB, free: 223.3 MB / 0.9514 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.8865/16.53, allocations: 152.3 MB / 4.587 GB, free: 110.5 MB / 0.9514 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003546/16.53, allocations: 360 kB / 4.587 GB, free: 110.1 MB / 0.9514 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004975/16.53, allocations: 52 kB / 4.587 GB, free: 110.1 MB / 0.9514 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001271/16.53, allocations: 183.3 kB / 4.587 GB, free: 109.9 MB / 0.9514 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.446/17.97, allocations: 223.2 MB / 4.805 GB, free: 238.5 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.000383/17.98, allocations: 10.41 kB / 4.806 GB, free: 238.5 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04309/18.02, allocations: 7.253 MB / 4.813 GB, free: 237.9 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1028/18.12, allocations: 39.74 MB / 4.851 GB, free: 229.2 MB / 0.9514 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0139/18.13, allocations: 1.447 MB / 4.853 GB, free: 228.6 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3523/18.49, allocations: 155.6 MB / 5.005 GB, free: 96.61 MB / 0.9514 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.437e-06/18.49, allocations: 22 kB / 5.005 GB, free: 96.59 MB / 0.9514 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.371/19.86, allocations: 200.2 MB / 5.2 GB, free: 226.7 MB / 0.9514 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03772/19.9, allocations: 11.32 MB / 5.211 GB, free: 223 MB / 0.9514 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01825/19.91, allocations: 0.9131 MB / 5.212 GB, free: 222.4 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04113/19.96, allocations: 1.544 MB / 5.214 GB, free: 221.9 MB / 0.9514 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02502/19.98, allocations: 4.688 MB / 5.218 GB, free: 221.2 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01178/19.99, allocations: 1.386 MB / 5.22 GB, free: 221 MB / 0.9514 GB
Notification: Performance of sorting global known variables: time 0.03781/20.03, allocations: 20.8 MB / 5.24 GB, free: 213.3 MB / 0.9514 GB
Notification: Performance of sort global known variables: time 4e-07/20.03, allocations: 3.5 kB / 5.24 GB, free: 213.3 MB / 0.9514 GB
Notification: Performance of remove unused functions: time 0.09791/20.13, allocations: 20.21 MB / 5.26 GB, free: 210.2 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03708/20.17, allocations: 10.81 MB / 5.27 GB, free: 207.3 MB / 0.9514 GB
Notification: Performance of simCode: created initialization part: time 0.2219/20.39, allocations: 85.3 MB / 5.354 GB, free: 153.4 MB / 0.9514 GB
Notification: Performance of simCode: created event and clocks part: time 1.898e-05/20.39, allocations: 0 / 5.354 GB, free: 153.4 MB / 0.9514 GB
Notification: Performance of simCode: created simulation system equations: time 0.1409/20.53, allocations: 54.53 MB / 5.407 GB, free: 103.9 MB / 0.9514 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06412/20.59, allocations: 7.695 MB / 5.414 GB, free: 96.53 MB / 0.9514 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.6955/21.29, allocations: 122.9 MB / 5.534 GB, free: 234 MB / 0.9514 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.06825/21.36, allocations: 30.56 MB / 5.564 GB, free: 231.8 MB / 0.9514 GB
Notification: Performance of simCode: alias equations: time 0.0623/21.42, allocations: 15.45 MB / 5.579 GB, free: 231.3 MB / 0.9514 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0282/21.45, allocations: 4.248 MB / 5.583 GB, free: 231.3 MB / 0.9514 GB
Notification: Performance of SimCode: time 1.243e-06/21.45, allocations: 0 / 5.583 GB, free: 231.3 MB / 0.9514 GB
Notification: Performance of Templates: time 2.566/24.01, allocations: 1.075 GB / 6.658 GB, free: 233.7 MB / 0.9514 GB
"
[Timeout remaining time 636]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -s gbode -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 66.37261311800103]
Failed to read output from testmodel.py, exit status != 0:
24.022290029010037 24.032835914 20.617951139
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7fdb832b6f50>