Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo", uses=false) Using package Chemical with version 1.4.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo) Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Running command: translateModel(Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO") translateModel(Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO") Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001183/0.001183, allocations: 102.4 kB / 16.35 MB, free: 5.875 MB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001188/0.001188, allocations: 191 kB / 17.29 MB, free: 5.516 MB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.341/1.341, allocations: 222.9 MB / 241 MB, free: 14.99 MB / 206.1 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo): time 0.08191/0.08191, allocations: 15.31 MB / 306.5 MB, free: 15.41 MB / 254.1 MB Notification: Performance of FrontEnd - loaded program: time 0.001359/0.001359, allocations: 58.62 kB / 371.7 MB, free: 50.71 MB / 302.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1008/0.1022, allocations: 53.61 MB / 425.3 MB, free: 13.3 MB / 302.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4740:7-4740:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4740:7-4740:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer "system" component but an inner "system" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO): time 0.04887/0.1511, allocations: 44.81 MB / 470.2 MB, free: 0.5469 MB / 334.1 MB Notification: Performance of NFInst.instExpressions: time 0.3401/0.4913, allocations: 86.75 MB / 0.5439 GB, free: 14.93 MB / 382.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.007827/0.4991, allocations: 76.44 kB / 0.5439 GB, free: 14.93 MB / 382.1 MB Notification: Performance of NFTyping.typeComponents: time 0.007531/0.5067, allocations: 1.92 MB / 0.5458 GB, free: 14.9 MB / 382.1 MB Notification: Performance of NFTyping.typeBindings: time 0.02586/0.5326, allocations: 7.017 MB / 0.5527 GB, free: 12.04 MB / 382.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.03247/0.5651, allocations: 12.19 MB / 0.5646 GB, free: 5.02 MB / 382.1 MB Notification: Performance of NFFlatten.flatten: time 0.03348/0.5986, allocations: 31.02 MB / 0.5949 GB, free: 9.738 MB / 414.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0347/0.6333, allocations: 26.3 MB / 0.6205 GB, free: 0.5508 MB / 430.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.03411/0.6675, allocations: 20.22 MB / 0.6403 GB, free: 12.61 MB / 462.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.03605/0.7036, allocations: 18.88 MB / 0.6587 GB, free: 10.25 MB / 478.1 MB Notification: Performance of NFPackage.collectConstants: time 0.01339/0.717, allocations: 3.594 MB / 0.6622 GB, free: 6.656 MB / 478.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.05302/0.7701, allocations: 12.69 MB / 0.6746 GB, free: 10.07 MB / 494.1 MB Notification: Performance of NFScalarize.scalarize: time 0.01865/0.7887, allocations: 8.129 MB / 0.6826 GB, free: 2.145 MB / 494.1 MB Notification: Performance of NFVerifyModel.verify: time 0.03715/0.8259, allocations: 14.1 MB / 0.6963 GB, free: 4.238 MB / 0.4981 GB Notification: Performance of NFConvertDAE.convert: time 0.5703/1.396, allocations: 49.02 MB / 0.7442 GB, free: 59.34 MB / 0.4982 GB Notification: Performance of FrontEnd - DAE generated: time 8.456e-06/1.396, allocations: 3.781 kB / 0.7442 GB, free: 59.34 MB / 0.4982 GB Notification: Performance of FrontEnd: time 1.713e-06/1.396, allocations: 0 / 0.7442 GB, free: 59.34 MB / 0.4982 GB Notification: Performance of Transformations before backend: time 0.001561/1.398, allocations: 0 / 0.7442 GB, free: 59.34 MB / 0.4982 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 4405 * Number of variables: 4405 Notification: Performance of Generate backend data structure: time 0.1155/1.513, allocations: 28.86 MB / 0.7724 GB, free: 49.38 MB / 0.4982 GB Notification: Performance of prepare preOptimizeDAE: time 4.338e-05/1.513, allocations: 9.906 kB / 0.7724 GB, free: 49.38 MB / 0.4982 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.03214/1.546, allocations: 4.525 MB / 0.7768 GB, free: 47.65 MB / 0.4982 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.03452/1.58, allocations: 13.98 MB / 0.7905 GB, free: 39.42 MB / 0.4982 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001972/1.582, allocations: 2.544 MB / 0.7929 GB, free: 36.61 MB / 0.4982 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.01245/1.595, allocations: 1.769 MB / 0.7947 GB, free: 34.84 MB / 0.4982 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.1059/1.701, allocations: 40.44 MB / 0.8342 GB, free: 10.17 MB / 0.5138 GB Notification: Performance of preOpt findStateOrder (simulation): time 0.0007569/1.701, allocations: 10.38 kB / 0.8342 GB, free: 10.17 MB / 0.5138 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.01215/1.714, allocations: 0.6811 MB / 0.8348 GB, free: 9.488 MB / 0.5138 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003603/1.714, allocations: 420.5 kB / 0.8352 GB, free: 9.082 MB / 0.5138 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1135/1.828, allocations: 54.47 MB / 0.8884 GB, free: 2.617 MB / 0.5607 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.5547/2.382, allocations: 148.7 MB / 1.034 GB, free: 127.2 MB / 0.5763 GB Notification: Performance of preOpt comSubExp (simulation): time 1.094/3.476, allocations: 351.6 MB / 1.377 GB, free: 27.41 MB / 0.5763 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.03807/3.514, allocations: 23.07 MB / 1.4 GB, free: 4.305 MB / 0.5763 GB Notification: Performance of preOpt evalFunc (simulation): time 0.4129/3.927, allocations: 101.9 MB / 1.499 GB, free: 159.5 MB / 0.5763 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.909e-05/3.927, allocations: 153.6 kB / 1.499 GB, free: 159.4 MB / 0.5763 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.0239/3.951, allocations: 5.258 MB / 1.504 GB, free: 154.2 MB / 0.5763 GB Notification: Performance of pre-optimization done (n=1160): time 6.579e-05/3.951, allocations: 0 / 1.504 GB, free: 154.2 MB / 0.5763 GB Notification: Performance of matching and sorting (n=1312): time 0.9943/4.946, allocations: 149.6 MB / 1.651 GB, free: 184.7 MB / 0.5763 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001225/4.946, allocations: 191 kB / 1.651 GB, free: 184.6 MB / 0.5763 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.02293/4.969, allocations: 11.97 MB / 1.662 GB, free: 178.8 MB / 0.5763 GB Notification: Performance of collectPreVariables (initialization): time 0.005874/4.975, allocations: 242.8 kB / 1.663 GB, free: 178.6 MB / 0.5763 GB Notification: Performance of collectInitialEqns (initialization): time 0.006308/4.981, allocations: 8.043 MB / 1.67 GB, free: 172.8 MB / 0.5763 GB Notification: Performance of collectInitialBindings (initialization): time 0.01042/4.991, allocations: 4.542 MB / 1.675 GB, free: 168.9 MB / 0.5763 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0181/5.01, allocations: 3.8 MB / 1.679 GB, free: 166.8 MB / 0.5763 GB Notification: Performance of setup shared object (initialization): time 8.057e-05/5.01, allocations: 301.1 kB / 1.679 GB, free: 166.6 MB / 0.5763 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.02484/5.035, allocations: 13.85 MB / 1.692 GB, free: 157.8 MB / 0.5763 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.03086/5.065, allocations: 19.33 MB / 1.711 GB, free: 136.1 MB / 0.5763 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.06062/5.126, allocations: 34.69 MB / 1.745 GB, free: 98.92 MB / 0.5763 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.000212/5.126, allocations: 53.86 kB / 1.745 GB, free: 98.87 MB / 0.5763 GB Notification: Performance of matching and sorting (n=2196) (initialization): time 0.748/5.874, allocations: 93.15 MB / 1.836 GB, free: 173.5 MB / 0.5763 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001238/5.874, allocations: 83.12 kB / 1.836 GB, free: 173.4 MB / 0.5763 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0002149/5.875, allocations: 169.8 kB / 1.836 GB, free: 173.4 MB / 0.5763 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.06533/5.94, allocations: 25.93 MB / 1.862 GB, free: 164 MB / 0.5763 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01984/5.96, allocations: 4.333 MB / 1.866 GB, free: 163.2 MB / 0.5763 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2271/6.187, allocations: 109 MB / 1.972 GB, free: 56.4 MB / 0.5763 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.02228/6.209, allocations: 0.9795 MB / 1.973 GB, free: 55.42 MB / 0.5763 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.006267/6.216, allocations: 1.085 MB / 1.974 GB, free: 54.33 MB / 0.5763 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 782 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (2138): * Single equations (assignments): 2135 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (41,12,73.3%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.0184/6.234, allocations: 6.215 MB / 1.981 GB, free: 48.48 MB / 0.5763 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.007638/6.242, allocations: 1.231 MB / 1.982 GB, free: 47.9 MB / 0.5763 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.6009/6.843, allocations: 57.55 MB / 2.038 GB, free: 178.1 MB / 0.5763 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001405/6.843, allocations: 138.5 kB / 2.038 GB, free: 178.1 MB / 0.5763 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 8.757e-05/6.843, allocations: 23.19 kB / 2.038 GB, free: 178.1 MB / 0.5763 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003735/6.843, allocations: 70.73 kB / 2.038 GB, free: 178.1 MB / 0.5763 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.3509/7.194, allocations: 86.21 MB / 2.122 GB, free: 108.2 MB / 0.5763 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0001155/7.194, allocations: 4 kB / 2.122 GB, free: 108.2 MB / 0.5763 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01602/7.21, allocations: 2.821 MB / 2.125 GB, free: 105.4 MB / 0.5763 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.03609/7.246, allocations: 14.34 MB / 2.139 GB, free: 91.25 MB / 0.5763 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.005899/7.252, allocations: 0.5502 MB / 2.14 GB, free: 90.7 MB / 0.5763 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.4123/7.665, allocations: 56.49 MB / 2.195 GB, free: 170.6 MB / 0.5763 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.522e-06/7.665, allocations: 11.39 kB / 2.195 GB, free: 170.6 MB / 0.5763 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.33/7.995, allocations: 74.67 MB / 2.268 GB, free: 156.7 MB / 0.5763 GB Notification: Performance of postOpt removeConstants (simulation): time 0.01576/8.011, allocations: 3.866 MB / 2.272 GB, free: 153.9 MB / 0.5763 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.009601/8.02, allocations: 348.2 kB / 2.272 GB, free: 153.6 MB / 0.5763 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0181/8.038, allocations: 0.6088 MB / 2.272 GB, free: 153.2 MB / 0.5763 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01055/8.049, allocations: 1.808 MB / 2.274 GB, free: 152.2 MB / 0.5763 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.004464/8.053, allocations: 0.5412 MB / 2.275 GB, free: 151.7 MB / 0.5763 GB Notification: Performance of sorting global known variables: time 0.01514/8.069, allocations: 8.23 MB / 2.283 GB, free: 144 MB / 0.5763 GB Notification: Performance of sort global known variables: time 3.51e-07/8.069, allocations: 7.312 kB / 2.283 GB, free: 144 MB / 0.5763 GB Notification: Performance of remove unused functions: time 0.04238/8.111, allocations: 7.828 MB / 2.29 GB, free: 136.7 MB / 0.5763 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 69 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,relaxed.COHm[1].logn,relaxed.COHm[2].logn,relaxed.COHm[3].logn,relaxed.COHm[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,tensed.COHm[1].logn,tensed.COHm[2].logn,tensed.COHm[3].logn,tensed.COHm[4].logn,CO2_free.logn,CO_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1436): * Single equations (assignments): 1433 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (41,12,73.3%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.01765/8.129, allocations: 4.195 MB / 2.295 GB, free: 133.6 MB / 0.5763 GB Notification: Performance of simCode: created initialization part: time 0.08227/8.211, allocations: 32.73 MB / 2.326 GB, free: 100.9 MB / 0.5763 GB Notification: Performance of simCode: created event and clocks part: time 1.104e-05/8.211, allocations: 4 kB / 2.326 GB, free: 100.9 MB / 0.5763 GB Notification: Performance of simCode: created simulation system equations: time 0.04667/8.258, allocations: 17.58 MB / 2.344 GB, free: 83.27 MB / 0.5763 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.02393/8.282, allocations: 2.869 MB / 2.346 GB, free: 80.74 MB / 0.5763 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.3449/8.627, allocations: 44.27 MB / 2.39 GB, free: 160.6 MB / 0.5763 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.02929/8.656, allocations: 11.41 MB / 2.401 GB, free: 159.5 MB / 0.5763 GB Notification: Performance of simCode: alias equations: time 0.02585/8.682, allocations: 6.087 MB / 2.407 GB, free: 159.4 MB / 0.5763 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.01097/8.693, allocations: 1.688 MB / 2.408 GB, free: 159.4 MB / 0.5763 GB Notification: Performance of SimCode: time 1.453e-06/8.693, allocations: 0 / 2.408 GB, free: 159.4 MB / 0.5763 GB Notification: Performance of Templates: time 0.7355/9.428, allocations: 373.5 MB / 2.773 GB, free: 30.93 MB / 0.5763 GB make -j1 -f Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.makefile (rm -f Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; mkfifo Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; head -c 1048576 < Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe >> ../files/Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.sim & ./Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO -abortSlowSimulation -alarm=480 -s gbode -lv LOG_STATS > Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe 2>&1)