Environment - simulationEnvironment:
startTime=0
stopTime=15000
tolerance=1e-06
numberOfIntervals=2500
stepSize=6
Regular simulation: ./Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllostery  -abortSlowSimulation -alarm=480 -s gbode -lv LOG_STATS
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4752:5-4753:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((solution.mass >= 0.0 and solution.mass <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= solution.mass <= 0.0, has value: 1.00024"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:383:7-385:72:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((H2O.SelfClustering_K >= 0.0 and H2O.SelfClustering_K <= 1.0)) --> "Variable violating min/max constraint: 0.0 <= H2O.SelfClustering_K <= 1.0, has value: 53.6279"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4563:5-4564:124:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((relaxed.speciation.subunitSolution.nj >= 0.0)) --> "Variable violating min constraint: 0.0 <= relaxed.speciation.subunitSolution.nj, has value: -5.79377e-07"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4568:5-4569:122:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((relaxed.solution.mj >= 0.0 and relaxed.solution.mj <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= relaxed.solution.mj <= 0.0, has value: 1.04376e-08"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4563:5-4564:124:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((tensed.speciation.subunitSolution.nj >= 0.0)) --> "Variable violating min constraint: 0.0 <= tensed.speciation.subunitSolution.nj, has value: -0.0119994"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4568:5-4569:122:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((tensed.solution.mj >= 0.0 and tensed.solution.mj <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= tensed.solution.mj <= 0.0, has value: 0.000216173"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4562:5-4562:67:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((CO2_free.solution.n >= 0.0 and CO2_free.solution.n <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= CO2_free.solution.n <= 0.0, has value: 1.02081"
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_STATS         | info    | gbode (single-rate integration): esdirk4
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |    0.0651651s          reading init.xml
|                 | |       | | |   0.00388309s          reading info.xml
|                 | |       | | |  0.000955933s [  0.2%] pre-initialization
|                 | |       | | |  0.000990688s [  0.2%] initialization
|                 | |       | | |   9.7673e-05s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |   0.00355298s [  0.6%] event-handling
|                 | |       | | |    0.0362156s [  6.0%] overhead
|                 | |       | | |     0.564424s [ 93.1%] simulation
|                 | |       | | |     0.606237s [100.0%] total
|                 | |       | | events
|                 | |       | | |    30 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |   432 steps taken
|                 | |       | | | 41821 calls of functionODE
|                 | |       | | |   221 evaluations of jacobian
|                 | |       | | |     4 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.