Environment - simulationEnvironment:
startTime=0
stopTime=15000
tolerance=1e-06
numberOfIntervals=2500
stepSize=6
Regular simulation: ./Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC  -abortSlowSimulation -alarm=480 -s gbode -lv LOG_STATS
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4752:5-4753:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((solution.mass >= 0.0 and solution.mass <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= solution.mass <= 0.0, has value: 1.00007"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4563:5-4564:124:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((R0_in_R.subunitSolution.nj >= 0.0)) --> "Variable violating min constraint: 0.0 <= R0_in_R.subunitSolution.nj, has value: -6.5552e-07"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4568:5-4569:122:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((R0_in_R.subunitSolution.mj >= 0.0 and R0_in_R.subunitSolution.mj <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= R0_in_R.subunitSolution.mj <= 0.0, has value: -1.18094e-08"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4563:5-4564:124:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((T0_in_T.subunitSolution.nj >= 0.0)) --> "Variable violating min constraint: 0.0 <= T0_in_T.subunitSolution.nj, has value: -0.00399934"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4568:5-4569:122:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((T0_in_T.subunitSolution.mj >= 0.0 and T0_in_T.subunitSolution.mj <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= T0_in_T.subunitSolution.mj <= 0.0, has value: -7.20493e-05"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4562:5-4562:67:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((DeoxyRHm[1].solution.n >= 0.0 and DeoxyRHm[1].solution.n <= 0.0)) --> "Variable violating min/max constraint: 0.0 <= DeoxyRHm[1].solution.n <= 0.0, has value: 1.01629"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:383:7-385:72:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((H2O.SelfClustering_K >= 0.0 and H2O.SelfClustering_K <= 1.0)) --> "Variable violating min/max constraint: 0.0 <= H2O.SelfClustering_K <= 1.0, has value: 53.7264"
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_STDOUT        | info    | GBODE: Solution of NLS failed, Try with updated Jacobian at time 0.417054.
LOG_STDOUT        | info    | GBODE: Solution of NLS failed, Try with updated Jacobian at time 0.470146.
LOG_STDOUT        | info    | GBODE: Solution of NLS failed, Try with updated Jacobian at time 0.704992.
LOG_STDOUT        | info    | Chattering detected around time 4.03085934914e-07..0.761027014037 (100 state events in a row with a total time delta less than the step size 3). This can be a performance bottleneck. Use -lv LOG_EVENTS for more information. The zero-crossing was: oxygenation_R[4].rr > 0.0
LOG_ASSERT        | debug   | Aborting simulation due to chattering being detected and the simulation flags requesting we do not continue further.