Environment - simulationEnvironment:
startTime=0
stopTime=1.3
tolerance=1e-06
numberOfIntervals=2500
stepSize=0.00052
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): (cd run_gbode && ../Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Develop.Hemoglobin_titration -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3)
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[1].products[1].conc, has value: -3.35588e-22"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[3].products[1].conc, has value: -3.59953e-21"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[4].products[1].conc, has value: -3.35588e-22"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[1].state, has value: -3.35588e-25"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[3].state, has value: -3.59953e-24"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((deoxyhemoglobin.R.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[4].state, has value: -3.35588e-25"
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].q_out.conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].q_out.conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].q_out.conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].q_out.conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable]
|                 | |       | The following assertion has been violated at time 0.000520
|                 | |       | ((deoxyhemoglobin.T.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.oxygenation, has value: -8.67362e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.001040
|                 | |       | ((deoxyhemoglobin.R.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[2].products[1].conc, has value: -5.5994e-29"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.001040
|                 | |       | ((deoxyhemoglobin.R.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[2].state, has value: -5.5994e-32"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.002080
|                 | |       | ((deoxyhemoglobin.T.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[3].products[1].conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.002080
|                 | |       | ((deoxyhemoglobin.T.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[3].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.005720
|                 | |       | ((deoxyhemoglobin.T.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[4].products[1].conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.005720
|                 | |       | ((deoxyhemoglobin.T.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[4].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].state, has value: -1.61559e-27"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -1.61559e-24"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].state, has value: -1.61559e-27"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -1.61559e-24"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].state, has value: -1.61559e-27"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -1.61559e-24"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].state, has value: -1.61559e-27"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -1.61559e-24"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.oxygenation, has value: -6.46235e-27"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.T.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[1].products[1].conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.T.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[2].products[1].conc, has value: -2.1684e-16"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.T.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[1].state, has value: -2.1684e-19"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.006240
|                 | |       | ((deoxyhemoglobin.T.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[2].state, has value: -2.1684e-19"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |            0s          reading init.xml
|                 | |       | | |            0s          reading info.xml
|                 | |       | | |   7.8017e-05s [  0.1%] pre-initialization
|                 | |       | | |  0.000907709s [  0.6%] initialization
|                 | |       | | |            0s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |  0.000914723s [  0.6%] creating output-file
|                 | |       | | |            0s [  0.0%] event-handling
|                 | |       | | |            0s [  0.0%] overhead
|                 | |       | | |      0.14397s [ 98.7%] simulation
|                 | |       | | |      0.14587s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |    16 steps taken
|                 | |       | | |  2571 calls of functionODE
|                 | |       | | |     1 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.