Environment - simulationEnvironment:
startTime=0
stopTime=15000
tolerance=1e-14
numberOfIntervals=2500
stepSize=6
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): (cd run_gbode && ../Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS -inputPath=.. -s gbode -gbm=radauIIA3)
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |            0s          reading init.xml
|                 | |       | | |            0s          reading info.xml
|                 | |       | | |    6.924e-05s [  0.1%] pre-initialization
|                 | |       | | |  0.000277603s [  0.5%] initialization
|                 | |       | | |            0s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |  0.000554551s [  1.1%] creating output-file
|                 | |       | | |            0s [  0.0%] event-handling
|                 | |       | | |            0s [  0.0%] overhead
|                 | |       | | |    0.0517338s [ 98.3%] simulation
|                 | |       | | |    0.0526352s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |    27 steps taken
|                 | |       | | |  2615 calls of functionODE
|                 | |       | | |     1 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.