Environment - simulationEnvironment:
startTime=0
stopTime=0.5
tolerance=1e-05
numberOfIntervals=2500
stepSize=0.0002
Regular simulation (gbode: the generic bi-rate ODE solver, with the radauIIA3 method): ./BioChem_BioChem.Examples.centralMetabolism.extra_cellular -abortSlowSimulation -alarm=240  -lv LOG_STATS -s gbode -gbm=radauIIA3
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |    0.0029874s          reading init.xml
|                 | |       | | |  0.000200497s          reading info.xml
|                 | |       | | |  0.000123131s [  2.0%] pre-initialization
|                 | |       | | |   6.5042e-05s [  1.1%] initialization
|                 | |       | | |    7.785e-06s [  0.1%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |    7.922e-06s [  0.1%] event-handling
|                 | |       | | |  0.000256393s [  4.1%] overhead
|                 | |       | | |   0.00572863s [ 92.6%] simulation
|                 | |       | | |    0.0061889s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |    60 steps taken
|                 | |       | | |   633 calls of functionODE
|                 | |       | | |    56 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |    13 convergence test failures
|                 | |       | | | 0.000662946s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.