Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001068/0.001068, allocations: 88.23 kB / 19.42 MB, free: 492 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001167/0.001167, allocations: 169 kB / 22.72 MB, free: 1.824 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9863/0.9863, allocations: 177.1 MB / 203.1 MB, free: 5.637 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.642/1.642, allocations: 273.5 MB / 0.5205 GB, free: 14.9 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.473e-06/1.473e-06, allocations: 0 / 0.6462 GB, free: 38.74 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.144e-05/2.291e-05, allocations: 2.312 kB / 0.6462 GB, free: 38.73 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005099/0.005122, allocations: 6.71 MB / 0.6528 GB, free: 34.44 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003003/0.008125, allocations: 2 MB / 0.6547 GB, free: 33.08 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003578/0.008483, allocations: 16.28 kB / 0.6548 GB, free: 33.08 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005653/0.009048, allocations: 295.2 kB / 0.655 GB, free: 32.92 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004769/0.009525, allocations: 470.1 kB / 0.6555 GB, free: 32.6 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006885/0.01021, allocations: 0.5321 MB / 0.656 GB, free: 32.27 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001241/0.01145, allocations: 1.801 MB / 0.6578 GB, free: 31.26 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003115/0.01177, allocations: 256.2 kB / 0.658 GB, free: 31.11 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005793/0.01235, allocations: 0.9198 MB / 0.6589 GB, free: 30.67 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004359/0.01278, allocations: 0.5352 MB / 0.6594 GB, free: 30.46 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001471/0.01293, allocations: 167.8 kB / 0.6596 GB, free: 30.46 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003585/0.01329, allocations: 310.7 kB / 0.6599 GB, free: 30.41 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001897/0.01348, allocations: 368.8 kB / 0.6602 GB, free: 30.18 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003683/0.01385, allocations: 0.5167 MB / 0.6607 GB, free: 29.92 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001016/0.01486, allocations: 1.384 MB / 0.6621 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.639e-06/0.01487, allocations: 1.438 kB / 0.6621 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.202e-06/0.01487, allocations: 0 / 0.6621 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.318e-05/0.01488, allocations: 0 / 0.6621 GB, free: 29.18 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.001782/0.01666, allocations: 2.334 MB / 0.6644 GB, free: 27.32 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.829e-05/0.0167, allocations: 11.38 kB / 0.6644 GB, free: 27.32 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006743/0.01737, allocations: 0.5161 MB / 0.6649 GB, free: 27.12 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006345/0.01801, allocations: 0.6851 MB / 0.6656 GB, free: 26.61 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.468e-05/0.01805, allocations: 71.97 kB / 0.6656 GB, free: 26.59 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001181/0.01817, allocations: 113.8 kB / 0.6657 GB, free: 26.55 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001166/0.01934, allocations: 1.307 MB / 0.667 GB, free: 25.71 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.465e-05/0.01937, allocations: 19.52 kB / 0.667 GB, free: 25.7 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.852e-05/0.01943, allocations: 36.75 kB / 0.6671 GB, free: 25.68 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.966e-05/0.01945, allocations: 21.06 kB / 0.6671 GB, free: 25.68 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008025/0.02025, allocations: 0.9709 MB / 0.668 GB, free: 25.06 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002351/0.0226, allocations: 2.639 MB / 0.6706 GB, free: 23.37 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.00104/0.02364, allocations: 1.171 MB / 0.6718 GB, free: 22.52 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004967/0.02414, allocations: 0.7952 MB / 0.6725 GB, free: 21.86 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.432e-05/0.0242, allocations: 22.23 kB / 0.6725 GB, free: 21.86 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001017/0.02521, allocations: 1.657 MB / 0.6742 GB, free: 20.55 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 3.086e-06/0.02522, allocations: 0 / 0.6742 GB, free: 20.55 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.004931/0.03015, allocations: 6.473 MB / 0.6805 GB, free: 15.83 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001715/0.03032, allocations: 1.035 MB / 0.6815 GB, free: 14.61 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007941/0.03111, allocations: 0.9263 MB / 0.6824 GB, free: 14.18 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 7.155e-05/0.03118, allocations: 77.78 kB / 0.6825 GB, free: 14.12 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002865/0.03147, allocations: 0.5724 MB / 0.683 GB, free: 13.67 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002503/0.03172, allocations: 0.5278 MB / 0.6836 GB, free: 13.24 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002868/0.03201, allocations: 285.1 kB / 0.6838 GB, free: 13.11 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.75e-05/0.03205, allocations: 488.1 kB / 0.6843 GB, free: 12.64 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006146/0.03266, allocations: 0.921 MB / 0.6852 GB, free: 11.89 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007411/0.0334, allocations: 1.427 MB / 0.6866 GB, free: 10.47 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001882/0.03528, allocations: 3.007 MB / 0.6895 GB, free: 7.766 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.051e-05/0.03529, allocations: 2.25 kB / 0.6895 GB, free: 7.766 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.002747/0.03804, allocations: 2.767 MB / 0.6922 GB, free: 5.91 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.000135/0.03818, allocations: 0.5643 MB / 0.6928 GB, free: 5.266 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.724e-05/0.03819, allocations: 10.66 kB / 0.6928 GB, free: 5.266 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.265e-05/0.03823, allocations: 16.25 kB / 0.6928 GB, free: 5.266 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007318/0.03896, allocations: 340.3 kB / 0.6931 GB, free: 5.23 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.392e-05/0.03898, allocations: 22.48 kB / 0.6931 GB, free: 5.227 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005364/0.03952, allocations: 75.84 kB / 0.6932 GB, free: 5.203 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002477/0.03977, allocations: 246.9 kB / 0.6935 GB, free: 5.184 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006945/0.04046, allocations: 0.9344 MB / 0.6944 GB, free: 4.336 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004932/0.04095, allocations: 442.3 kB / 0.6948 GB, free: 4.172 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001356/0.04109, allocations: 140.1 kB / 0.6949 GB, free: 4.078 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.141e-05/0.0411, allocations: 14.41 kB / 0.6949 GB, free: 4.078 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.43e-05/0.04112, allocations: 2.312 kB / 0.6949 GB, free: 4.078 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.294e-05/0.04114, allocations: 7.25 kB / 0.6949 GB, free: 4.078 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003105/0.04424, allocations: 3.973 MB / 0.6988 GB, free: 0.6797 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.067e-06/0.04425, allocations: 4 kB / 0.6988 GB, free: 0.6758 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000582/0.04483, allocations: 227.7 kB / 0.699 GB, free: 464 kB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.023e-06/0.04484, allocations: 4 kB / 0.699 GB, free: 460 kB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.269e-05/0.04491, allocations: 71.95 kB / 0.6991 GB, free: 388 kB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.579e-06/0.04491, allocations: 4 kB / 0.6991 GB, free: 384 kB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.295e-06/0.04491, allocations: 4 kB / 0.6991 GB, free: 380 kB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002986/0.0479, allocations: 4.024 MB / 0.7031 GB, free: 12.03 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0004495/0.04835, allocations: 318.9 kB / 0.7034 GB, free: 11.72 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001623/0.04851, allocations: 68 kB / 0.7034 GB, free: 11.65 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003739/0.04889, allocations: 71.58 kB / 0.7035 GB, free: 11.59 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000216/0.0491, allocations: 151.7 kB / 0.7036 GB, free: 11.44 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001851/0.04929, allocations: 234.9 kB / 0.7039 GB, free: 11.21 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005391/0.04983, allocations: 0.5439 MB / 0.7044 GB, free: 10.66 MB / 0.5418 GB Notification: Performance of sort global known variables: time 1.91e-07/0.04983, allocations: 0 / 0.7044 GB, free: 10.66 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.0009783/0.05081, allocations: 380 kB / 0.7048 GB, free: 10.29 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003638/0.05117, allocations: 286.8 kB / 0.705 GB, free: 10 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.002112/0.05328, allocations: 3.153 MB / 0.7081 GB, free: 6.391 MB / 0.5418 GB Notification: Performance of simCode: created event and clocks part: time 2.124e-06/0.05328, allocations: 4.062 kB / 0.7081 GB, free: 6.387 MB / 0.5418 GB Notification: Performance of simCode: created simulation system equations: time 0.0009955/0.05428, allocations: 1.894 MB / 0.71 GB, free: 4.191 MB / 0.5418 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001072/0.05535, allocations: 399 kB / 0.7103 GB, free: 3.836 MB / 0.5418 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004564/0.05991, allocations: 3.916 MB / 0.7142 GB, free: 15.86 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002243/0.06014, allocations: 306.7 kB / 0.7145 GB, free: 15.54 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0003877/0.06053, allocations: 107.5 kB / 0.7146 GB, free: 15.43 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001673/0.06069, allocations: 96.48 kB / 0.7147 GB, free: 15.34 MB / 0.5574 GB Notification: Performance of SimCode: time 1.623e-06/0.0607, allocations: 0 / 0.7147 GB, free: 15.34 MB / 0.5574 GB Notification: Performance of Templates: time 0.02507/0.08576, allocations: 22.92 MB / 0.737 GB, free: 9.539 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_cvode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_cvode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_cvode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_cvode.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS -s cvode > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_cvode.pipe 2>&1) [Timeout 240] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS -s gbode -gbm=radauIIA3 > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_gbode.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.928129893960431]