Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001254/0.001254, allocations: 104.3 kB / 19.7 MB, free: 2.152 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001674/0.001674, allocations: 216.3 kB / 22.99 MB, free: 4.965 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.404/1.404, allocations: 230.6 MB / 256.8 MB, free: 7.789 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1429/0.1429, allocations: 23.93 MB / 337.1 MB, free: 10.89 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002072/0.002072, allocations: 67.91 kB / 472.4 MB, free: 6.926 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3497/0.3518, allocations: 59.88 MB / 0.5198 GB, free: 9.812 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.128/0.4797, allocations: 74.23 MB / 0.5923 GB, free: 15.45 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5834/1.063, allocations: 191.2 MB / 0.7791 GB, free: 16.09 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01834/1.081, allocations: 232 kB / 0.7793 GB, free: 16.09 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01654/1.098, allocations: 4.452 MB / 0.7836 GB, free: 16.06 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.061/1.159, allocations: 17.86 MB / 0.8011 GB, free: 15.55 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.08692/1.246, allocations: 32.67 MB / 0.833 GB, free: 15.97 MB / 0.5762 GB
Notification: Performance of NFFlatten.flatten: time 0.1016/1.348, allocations: 89.11 MB / 0.92 GB, free: 2.145 MB / 0.6387 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.08841/1.436, allocations: 52.29 MB / 0.9711 GB, free: 15.73 MB / 0.7012 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.8814/2.317, allocations: 56.57 MB / 1.026 GB, free: 43.85 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.09856/2.416, allocations: 52.03 MB / 1.077 GB, free: 41.01 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.04209/2.458, allocations: 12.2 MB / 1.089 GB, free: 41.01 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1202/2.578, allocations: 34.5 MB / 1.123 GB, free: 32.6 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.04838/2.627, allocations: 24.02 MB / 1.146 GB, free: 13.05 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.1273/2.754, allocations: 39.03 MB / 1.184 GB, free: 12.82 MB / 0.7325 GB
Notification: Performance of NFConvertDAE.convert: time 1.002/3.756, allocations: 159.6 MB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of FrontEnd - DAE generated: time 1.102e-05/3.756, allocations: 1.031 kB / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of FrontEnd: time 1.944e-06/3.756, allocations: 0 / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Performance of Transformations before backend: time 0.005875/3.762, allocations: 0 / 1.34 GB, free: 108.3 MB / 0.842 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2706/4.032, allocations: 71.68 MB / 1.41 GB, free: 87.92 MB / 0.842 GB
Notification: Performance of prepare preOptimizeDAE: time 3.79e-05/4.032, allocations: 10.75 kB / 1.41 GB, free: 87.92 MB / 0.842 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08557/4.118, allocations: 11.94 MB / 1.422 GB, free: 84.87 MB / 0.842 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1126/4.23, allocations: 42.61 MB / 1.463 GB, free: 77.52 MB / 0.842 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.006768/4.237, allocations: 9.239 MB / 1.473 GB, free: 69 MB / 0.842 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03755/4.275, allocations: 4.601 MB / 1.477 GB, free: 67.34 MB / 0.842 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.3075/4.582, allocations: 112.9 MB / 1.587 GB, free: 2.41 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002164/4.585, allocations: 34.66 kB / 1.587 GB, free: 2.395 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03541/4.62, allocations: 1.762 MB / 1.589 GB, free: 0.6328 MB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001174/4.621, allocations: 1.056 MB / 1.59 GB, free: 15.57 MB / 0.9045 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.654/5.275, allocations: 153 MB / 1.74 GB, free: 352.8 MB / 0.9514 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.27/6.545, allocations: 389 MB / 2.119 GB, free: 320.1 MB / 0.9514 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.134/8.679, allocations: 0.6474 GB / 2.767 GB, free: 260.7 MB / 0.9514 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.1093/8.789, allocations: 60.06 MB / 2.825 GB, free: 209.1 MB / 0.9514 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.9422/9.731, allocations: 254.6 MB / 3.074 GB, free: 316 MB / 0.9514 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003156/9.731, allocations: 342.3 kB / 3.074 GB, free: 315.9 MB / 0.9514 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09246/9.823, allocations: 29.13 MB / 3.103 GB, free: 315.9 MB / 0.9514 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001621/9.824, allocations: 0 / 3.103 GB, free: 315.9 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=3387): time 2.376/12.2, allocations: 423.7 MB / 3.517 GB, free: 316.6 MB / 0.9514 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002918/12.2, allocations: 453.6 kB / 3.517 GB, free: 316.5 MB / 0.9514 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0521/12.25, allocations: 30.72 MB / 3.547 GB, free: 306 MB / 0.9514 GB
Notification: Performance of collectPreVariables (initialization): time 0.0144/12.27, allocations: 0.5736 MB / 3.548 GB, free: 305.6 MB / 0.9514 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01768/12.28, allocations: 21.63 MB / 3.569 GB, free: 293.2 MB / 0.9514 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0217/12.31, allocations: 12.42 MB / 3.581 GB, free: 283.5 MB / 0.9514 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04782/12.35, allocations: 9.93 MB / 3.591 GB, free: 279.7 MB / 0.9514 GB
Notification: Performance of setup shared object (initialization): time 4.649e-05/12.35, allocations: 305 kB / 3.591 GB, free: 279.4 MB / 0.9514 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.06346/12.42, allocations: 39.05 MB / 3.629 GB, free: 263.7 MB / 0.9514 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0759/12.49, allocations: 53.24 MB / 3.681 GB, free: 223.9 MB / 0.9514 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1441/12.64, allocations: 96.37 MB / 3.775 GB, free: 124.8 MB / 0.9514 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005739/12.64, allocations: 128 kB / 3.775 GB, free: 124.7 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.715/14.35, allocations: 257.1 MB / 4.026 GB, free: 248.2 MB / 0.9514 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003435/14.35, allocations: 197.6 kB / 4.026 GB, free: 248.2 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0007508/14.35, allocations: 447.5 kB / 4.027 GB, free: 248.2 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1801/14.53, allocations: 73.7 MB / 4.099 GB, free: 204.6 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05082/14.58, allocations: 11.18 MB / 4.11 GB, free: 194.1 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.9964/15.58, allocations: 309.6 MB / 4.412 GB, free: 231.7 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05538/15.64, allocations: 2.478 MB / 4.415 GB, free: 231 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01777/15.65, allocations: 2.802 MB / 4.417 GB, free: 230.6 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05945/15.71, allocations: 18.34 MB / 4.435 GB, free: 222.8 MB / 0.9514 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0273/15.74, allocations: 3.167 MB / 4.438 GB, free: 222.8 MB / 0.9514 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.8371/16.58, allocations: 152.3 MB / 4.587 GB, free: 120.1 MB / 0.9514 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0004323/16.58, allocations: 363.9 kB / 4.587 GB, free: 119.7 MB / 0.9514 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0005369/16.58, allocations: 56 kB / 4.587 GB, free: 119.7 MB / 0.9514 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001266/16.58, allocations: 183.3 kB / 4.588 GB, free: 119.5 MB / 0.9514 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.356/17.94, allocations: 223.2 MB / 4.806 GB, free: 241.6 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003345/17.94, allocations: 12.06 kB / 4.806 GB, free: 241.6 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04593/17.98, allocations: 7.252 MB / 4.813 GB, free: 241 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1008/18.08, allocations: 39.75 MB / 4.852 GB, free: 232.4 MB / 0.9514 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01467/18.1, allocations: 1.444 MB / 4.853 GB, free: 231.7 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3374/18.44, allocations: 155.6 MB / 5.005 GB, free: 108 MB / 0.9514 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.438e-06/18.44, allocations: 19.94 kB / 5.005 GB, free: 107.9 MB / 0.9514 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.33/19.77, allocations: 200.2 MB / 5.2 GB, free: 223.8 MB / 0.9514 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03794/19.8, allocations: 11.32 MB / 5.211 GB, free: 220.1 MB / 0.9514 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01727/19.82, allocations: 0.9267 MB / 5.212 GB, free: 219.5 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04172/19.86, allocations: 1.547 MB / 5.214 GB, free: 219 MB / 0.9514 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02445/19.89, allocations: 4.677 MB / 5.218 GB, free: 218.3 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01177/19.9, allocations: 1.385 MB / 5.22 GB, free: 218.1 MB / 0.9514 GB
Notification: Performance of sorting global known variables: time 0.03548/19.93, allocations: 20.8 MB / 5.24 GB, free: 210.5 MB / 0.9514 GB
Notification: Performance of sort global known variables: time 1.9e-07/19.93, allocations: 2.375 kB / 5.24 GB, free: 210.5 MB / 0.9514 GB
Notification: Performance of remove unused functions: time 0.09486/20.03, allocations: 20.22 MB / 5.26 GB, free: 207.4 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03485/20.06, allocations: 10.8 MB / 5.27 GB, free: 204.5 MB / 0.9514 GB
Notification: Performance of simCode: created initialization part: time 0.2172/20.28, allocations: 85.3 MB / 5.354 GB, free: 159.1 MB / 0.9514 GB
Notification: Performance of simCode: created event and clocks part: time 2.255e-05/20.28, allocations: 7.938 kB / 5.354 GB, free: 159.1 MB / 0.9514 GB
Notification: Performance of simCode: created simulation system equations: time 0.1331/20.41, allocations: 54.53 MB / 5.407 GB, free: 113.8 MB / 0.9514 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05895/20.47, allocations: 7.693 MB / 5.414 GB, free: 107.6 MB / 0.9514 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.7215/21.19, allocations: 122.9 MB / 5.534 GB, free: 245.4 MB / 0.9514 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.06179/21.26, allocations: 30.57 MB / 5.564 GB, free: 243.2 MB / 0.9514 GB
Notification: Performance of simCode: alias equations: time 0.05876/21.32, allocations: 15.44 MB / 5.579 GB, free: 242.7 MB / 0.9514 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.03109/21.35, allocations: 4.247 MB / 5.584 GB, free: 242.7 MB / 0.9514 GB
Notification: Performance of SimCode: time 1.262e-06/21.35, allocations: 2.938 kB / 5.584 GB, free: 242.7 MB / 0.9514 GB
Notification: Performance of Templates: time 2.694/24.04, allocations: 1.075 GB / 6.658 GB, free: 242.5 MB / 0.9514 GB
"
[Timeout remaining time 636]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -s cvode -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 66.85465448300238]
Failed to read output from testmodel.py, exit status != 0:
24.050229697008035 24.060223743 20.30151758
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f4b739a2f50>