Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00153/0.00153, allocations: 96.42 kB / 19.7 MB, free: 2.133 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001726/0.001726, allocations: 207.8 kB / 22.99 MB, free: 4.957 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.411/1.411, allocations: 230.6 MB / 256.8 MB, free: 7.797 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1484/0.1484, allocations: 23.87 MB / 337.1 MB, free: 10.95 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002012/0.002012, allocations: 68.17 kB / 472.4 MB, free: 6.988 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3375/0.3395, allocations: 59.85 MB / 0.5198 GB, free: 9.824 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1216/0.4611, allocations: 74.23 MB / 0.5922 GB, free: 15.52 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.6264/1.088, allocations: 191.2 MB / 0.779 GB, free: 16.11 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01672/1.104, allocations: 230.7 kB / 0.7792 GB, free: 16.11 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01718/1.121, allocations: 4.452 MB / 0.7836 GB, free: 16.08 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.06081/1.182, allocations: 17.87 MB / 0.801 GB, free: 15.56 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.08915/1.271, allocations: 32.66 MB / 0.8329 GB, free: 0 / 0.5606 GB
Notification: Performance of NFFlatten.flatten: time 0.1067/1.378, allocations: 89.12 MB / 0.9199 GB, free: 2.184 MB / 0.6387 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.08751/1.466, allocations: 52.3 MB / 0.971 GB, free: 15.77 MB / 0.7012 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.8383/2.304, allocations: 56.56 MB / 1.026 GB, free: 43.98 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.09421/2.398, allocations: 52.03 MB / 1.077 GB, free: 41.14 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.04174/2.44, allocations: 12.21 MB / 1.089 GB, free: 41.14 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.119/2.559, allocations: 34.5 MB / 1.123 GB, free: 32.67 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.0495/2.608, allocations: 24.02 MB / 1.146 GB, free: 13.12 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.1286/2.737, allocations: 39.02 MB / 1.184 GB, free: 12.84 MB / 0.7325 GB
Notification: Performance of NFConvertDAE.convert: time 1.057/3.794, allocations: 159.6 MB / 1.34 GB, free: 108.4 MB / 0.842 GB
Notification: Performance of FrontEnd - DAE generated: time 5.421e-06/3.794, allocations: 0.7812 kB / 1.34 GB, free: 108.4 MB / 0.842 GB
Notification: Performance of FrontEnd: time 1.482e-06/3.794, allocations: 0 / 1.34 GB, free: 108.4 MB / 0.842 GB
Notification: Performance of Transformations before backend: time 0.003838/3.797, allocations: 0 / 1.34 GB, free: 108.4 MB / 0.842 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2606/4.058, allocations: 71.68 MB / 1.41 GB, free: 88 MB / 0.842 GB
Notification: Performance of prepare preOptimizeDAE: time 3.849e-05/4.058, allocations: 11.84 kB / 1.41 GB, free: 88 MB / 0.842 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08056/4.139, allocations: 11.94 MB / 1.422 GB, free: 84.95 MB / 0.842 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1162/4.255, allocations: 42.61 MB / 1.463 GB, free: 77.62 MB / 0.842 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.006559/4.261, allocations: 9.244 MB / 1.472 GB, free: 69.11 MB / 0.842 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03448/4.296, allocations: 4.596 MB / 1.477 GB, free: 67.45 MB / 0.842 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.3378/4.634, allocations: 112.9 MB / 1.587 GB, free: 2.594 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002574/4.636, allocations: 27.94 kB / 1.587 GB, free: 2.582 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03854/4.675, allocations: 1.762 MB / 1.589 GB, free: 0.8203 MB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001245/4.676, allocations: 1.055 MB / 1.59 GB, free: 15.76 MB / 0.9045 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.6497/5.326, allocations: 153 MB / 1.739 GB, free: 352.2 MB / 0.9514 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.266/6.592, allocations: 389 MB / 2.119 GB, free: 317.3 MB / 0.9514 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.177/8.768, allocations: 0.6474 GB / 2.767 GB, free: 258.4 MB / 0.9514 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.1012/8.87, allocations: 60.06 MB / 2.825 GB, free: 206.8 MB / 0.9514 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.9308/9.8, allocations: 254.6 MB / 3.074 GB, free: 314.6 MB / 0.9514 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002676/9.801, allocations: 339 kB / 3.074 GB, free: 314.5 MB / 0.9514 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09571/9.896, allocations: 29.13 MB / 3.103 GB, free: 314.4 MB / 0.9514 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001834/9.897, allocations: 0 / 3.103 GB, free: 314.4 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=3387): time 2.435/12.33, allocations: 423.7 MB / 3.517 GB, free: 315.4 MB / 0.9514 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002595/12.33, allocations: 447.8 kB / 3.517 GB, free: 315.3 MB / 0.9514 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.06019/12.39, allocations: 30.73 MB / 3.547 GB, free: 304.8 MB / 0.9514 GB
Notification: Performance of collectPreVariables (initialization): time 0.014/12.41, allocations: 0.5685 MB / 3.548 GB, free: 304.4 MB / 0.9514 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01785/12.42, allocations: 21.63 MB / 3.569 GB, free: 292 MB / 0.9514 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02512/12.45, allocations: 12.42 MB / 3.581 GB, free: 282.3 MB / 0.9514 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05639/12.51, allocations: 9.932 MB / 3.59 GB, free: 278.5 MB / 0.9514 GB
Notification: Performance of setup shared object (initialization): time 5.103e-05/12.51, allocations: 301.1 kB / 3.591 GB, free: 278.2 MB / 0.9514 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0671/12.57, allocations: 39.04 MB / 3.629 GB, free: 262.5 MB / 0.9514 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.07816/12.65, allocations: 53.24 MB / 3.681 GB, free: 222.1 MB / 0.9514 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1461/12.8, allocations: 96.37 MB / 3.775 GB, free: 120.3 MB / 0.9514 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005667/12.8, allocations: 132.3 kB / 3.775 GB, free: 120.1 MB / 0.9514 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.764/14.56, allocations: 257.1 MB / 4.026 GB, free: 246.4 MB / 0.9514 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0007493/14.56, allocations: 198.5 kB / 4.026 GB, free: 246.4 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.00095/14.56, allocations: 445.5 kB / 4.027 GB, free: 246.4 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1795/14.74, allocations: 73.71 MB / 4.099 GB, free: 198.9 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05043/14.79, allocations: 11.17 MB / 4.11 GB, free: 188.4 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.038/15.83, allocations: 309.6 MB / 4.412 GB, free: 232.8 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05954/15.89, allocations: 2.478 MB / 4.414 GB, free: 232.1 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01757/15.91, allocations: 2.799 MB / 4.417 GB, free: 231.8 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05773/15.97, allocations: 18.34 MB / 4.435 GB, free: 224 MB / 0.9514 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02366/15.99, allocations: 3.166 MB / 4.438 GB, free: 224 MB / 0.9514 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.8851/16.88, allocations: 152.3 MB / 4.587 GB, free: 113.3 MB / 0.9514 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.000446/16.88, allocations: 360 kB / 4.587 GB, free: 112.9 MB / 0.9514 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0005576/16.88, allocations: 56 kB / 4.587 GB, free: 112.9 MB / 0.9514 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001308/16.88, allocations: 181.2 kB / 4.588 GB, free: 112.7 MB / 0.9514 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.448/18.33, allocations: 223.2 MB / 4.806 GB, free: 239 MB / 0.9514 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002907/18.33, allocations: 11.09 kB / 4.806 GB, free: 239 MB / 0.9514 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04437/18.37, allocations: 7.254 MB / 4.813 GB, free: 238.4 MB / 0.9514 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1002/18.47, allocations: 39.74 MB / 4.851 GB, free: 229.7 MB / 0.9514 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01329/18.48, allocations: 1.449 MB / 4.853 GB, free: 229.1 MB / 0.9514 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3412/18.83, allocations: 155.6 MB / 5.005 GB, free: 99.87 MB / 0.9514 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.225e-06/18.83, allocations: 11.94 kB / 5.005 GB, free: 99.86 MB / 0.9514 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.318/20.14, allocations: 200.2 MB / 5.2 GB, free: 227.4 MB / 0.9514 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03783/20.18, allocations: 11.32 MB / 5.211 GB, free: 223.7 MB / 0.9514 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01743/20.2, allocations: 0.9158 MB / 5.212 GB, free: 223.1 MB / 0.9514 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03998/20.24, allocations: 1.545 MB / 5.214 GB, free: 222.6 MB / 0.9514 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0256/20.26, allocations: 4.682 MB / 5.218 GB, free: 221.9 MB / 0.9514 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01369/20.28, allocations: 1.383 MB / 5.22 GB, free: 221.7 MB / 0.9514 GB
Notification: Performance of sorting global known variables: time 0.0377/20.32, allocations: 20.8 MB / 5.24 GB, free: 214.1 MB / 0.9514 GB
Notification: Performance of sort global known variables: time 1.91e-07/20.32, allocations: 2.531 kB / 5.24 GB, free: 214.1 MB / 0.9514 GB
Notification: Performance of remove unused functions: time 0.09718/20.41, allocations: 20.21 MB / 5.26 GB, free: 211 MB / 0.9514 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03654/20.45, allocations: 10.81 MB / 5.27 GB, free: 208.1 MB / 0.9514 GB
Notification: Performance of simCode: created initialization part: time 0.2234/20.67, allocations: 85.3 MB / 5.354 GB, free: 156.2 MB / 0.9514 GB
Notification: Performance of simCode: created event and clocks part: time 1.908e-05/20.67, allocations: 4 kB / 5.354 GB, free: 156.2 MB / 0.9514 GB
Notification: Performance of simCode: created simulation system equations: time 0.133/20.81, allocations: 54.53 MB / 5.407 GB, free: 107.7 MB / 0.9514 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06442/20.87, allocations: 7.691 MB / 5.414 GB, free: 100.3 MB / 0.9514 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.7339/21.6, allocations: 122.9 MB / 5.534 GB, free: 235.7 MB / 0.9514 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.06933/21.67, allocations: 30.56 MB / 5.564 GB, free: 233.5 MB / 0.9514 GB
Notification: Performance of simCode: alias equations: time 0.06024/21.73, allocations: 15.45 MB / 5.579 GB, free: 233 MB / 0.9514 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0301/21.76, allocations: 4.252 MB / 5.583 GB, free: 233 MB / 0.9514 GB
Notification: Performance of SimCode: time 1.633e-06/21.76, allocations: 0 / 5.583 GB, free: 233 MB / 0.9514 GB
Notification: Performance of Templates: time 2.798/24.56, allocations: 1.075 GB / 6.658 GB, free: 232.9 MB / 0.9514 GB
"
[Timeout remaining time 635]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -s cvode -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 66.51651770199533]
Failed to read output from testmodel.py, exit status != 0:
24.572143644996686 24.581996872 20.785634685
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7fc29fc2ef50>