Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007825/0.0007825, allocations: 80.45 kB / 19.9 MB, free: 12 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0007587/0.0007587, allocations: 165.9 kB / 23.18 MB, free: 1.383 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8781/0.8781, allocations: 177.2 MB / 203.6 MB, free: 5.77 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.107/0.107, allocations: 17.38 MB / 277.4 MB, free: 11.87 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0008686/0.0008686, allocations: 67.91 kB / 412.8 MB, free: 15.88 MB / 394.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3031/0.3039, allocations: 59.83 MB / 472.7 MB, free: 29.79 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.04902/0.3529, allocations: 74.37 MB / 0.5342 GB, free: 8.77 MB / 442.7 MB
Notification: Performance of NFInst.instExpressions: time 0.4288/0.7817, allocations: 191.3 MB / 0.7211 GB, free: 11.89 MB / 0.5261 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01509/0.7968, allocations: 227.8 kB / 0.7213 GB, free: 11.89 MB / 0.5261 GB
Notification: Performance of NFTyping.typeComponents: time 0.0127/0.8095, allocations: 4.456 MB / 0.7256 GB, free: 10.46 MB / 0.5261 GB
Notification: Performance of NFTyping.typeBindings: time 0.0467/0.8562, allocations: 17.89 MB / 0.7431 GB, free: 15.28 MB / 0.5417 GB
Notification: Performance of NFTyping.typeClassSections: time 0.07173/0.9279, allocations: 32.7 MB / 0.775 GB, free: 7.758 MB / 0.5573 GB
Notification: Performance of NFFlatten.flatten: time 0.06633/0.9943, allocations: 89.11 MB / 0.862 GB, free: 14.64 MB / 0.6511 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.6702/1.664, allocations: 51.99 MB / 0.9128 GB, free: 10.11 MB / 0.6668 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.1156/1.78, allocations: 77.19 MB / 0.9882 GB, free: 7.27 MB / 0.6668 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.08496/1.865, allocations: 54.3 MB / 1.041 GB, free: 14.6 MB / 0.698 GB
Notification: Performance of NFPackage.collectConstants: time 0.04106/1.906, allocations: 12.2 MB / 1.053 GB, free: 2.395 MB / 0.698 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1018/2.008, allocations: 33.98 MB / 1.086 GB, free: 2.574 MB / 0.7293 GB
Notification: Performance of NFScalarize.scalarize: time 0.04838/2.056, allocations: 24.02 MB / 1.11 GB, free: 11.25 MB / 0.7605 GB
Notification: Performance of NFVerifyModel.verify: time 0.07493/2.131, allocations: 34.41 MB / 1.143 GB, free: 9.582 MB / 0.7918 GB
Notification: Performance of NFConvertDAE.convert: time 0.8856/3.017, allocations: 159.9 MB / 1.3 GB, free: 135.3 MB / 0.8232 GB
Notification: Performance of FrontEnd - DAE generated: time 8.596e-06/3.017, allocations: 0 / 1.3 GB, free: 135.3 MB / 0.8232 GB
Notification: Performance of FrontEnd: time 2.394e-06/3.017, allocations: 0 / 1.3 GB, free: 135.3 MB / 0.8232 GB
Notification: Performance of Transformations before backend: time 0.003873/3.021, allocations: 0 / 1.3 GB, free: 135.3 MB / 0.8232 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2424/3.263, allocations: 71.68 MB / 1.37 GB, free: 102.9 MB / 0.8232 GB
Notification: Performance of prepare preOptimizeDAE: time 4.515e-05/3.263, allocations: 10.38 kB / 1.37 GB, free: 102.9 MB / 0.8232 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.06407/3.327, allocations: 11.94 MB / 1.381 GB, free: 97.5 MB / 0.8232 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.08005/3.407, allocations: 42.62 MB / 1.423 GB, free: 63.96 MB / 0.8232 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005756/3.413, allocations: 9.239 MB / 1.432 GB, free: 53.38 MB / 0.8232 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03555/3.448, allocations: 4.596 MB / 1.436 GB, free: 48.79 MB / 0.8232 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.6056/4.054, allocations: 112.9 MB / 1.547 GB, free: 231.6 MB / 0.8232 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0009435/4.055, allocations: 27.31 kB / 1.547 GB, free: 231.6 MB / 0.8232 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.01721/4.072, allocations: 1.757 MB / 1.548 GB, free: 230.2 MB / 0.8232 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007669/4.073, allocations: 1.058 MB / 1.549 GB, free: 230.2 MB / 0.8232 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.2173/4.29, allocations: 153 MB / 1.699 GB, free: 110.4 MB / 0.8232 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.226/5.516, allocations: 389.2 MB / 2.079 GB, free: 48.07 MB / 0.8232 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.06/7.576, allocations: 0.6474 GB / 2.726 GB, free: 58.76 MB / 0.8232 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.6973/8.273, allocations: 60.05 MB / 2.785 GB, free: 219.7 MB / 0.8232 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.487/8.76, allocations: 254.7 MB / 3.034 GB, free: 62.21 MB / 0.8232 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000221/8.761, allocations: 341.9 kB / 3.034 GB, free: 61.86 MB / 0.8232 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.07288/8.834, allocations: 29.13 MB / 3.063 GB, free: 34.32 MB / 0.8232 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0002028/8.834, allocations: 2.062 kB / 3.063 GB, free: 34.32 MB / 0.8232 GB
Notification: Performance of matching and sorting (n=3387): time 2.164/11, allocations: 423.7 MB / 3.476 GB, free: 179.9 MB / 0.8232 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.000383/11, allocations: 451.2 kB / 3.477 GB, free: 179.7 MB / 0.8232 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.1032/11.1, allocations: 30.72 MB / 3.507 GB, free: 164.5 MB / 0.8232 GB
Notification: Performance of collectPreVariables (initialization): time 0.01506/11.12, allocations: 0.5723 MB / 3.507 GB, free: 164.1 MB / 0.8232 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01646/11.13, allocations: 21.64 MB / 3.528 GB, free: 148.5 MB / 0.8232 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02383/11.16, allocations: 12.41 MB / 3.541 GB, free: 137.8 MB / 0.8232 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05555/11.21, allocations: 9.923 MB / 3.55 GB, free: 132.3 MB / 0.8232 GB
Notification: Performance of setup shared object (initialization): time 4.086e-05/11.21, allocations: 308.9 kB / 3.551 GB, free: 132 MB / 0.8232 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.05729/11.27, allocations: 39.05 MB / 3.589 GB, free: 109.7 MB / 0.8232 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.06772/11.34, allocations: 53.25 MB / 3.641 GB, free: 50.59 MB / 0.8232 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.5321/11.87, allocations: 96.37 MB / 3.735 GB, free: 156.8 MB / 0.8232 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006074/11.87, allocations: 129 kB / 3.735 GB, free: 156.8 MB / 0.8232 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 0.7986/12.67, allocations: 257.1 MB / 3.986 GB, free: 4.188 MB / 0.8388 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0004906/12.67, allocations: 203.2 kB / 3.986 GB, free: 3.992 MB / 0.8388 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0006692/12.67, allocations: 444 kB / 3.987 GB, free: 3.559 MB / 0.8388 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.5357/13.21, allocations: 73.7 MB / 4.059 GB, free: 181 MB / 0.8544 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05089/13.26, allocations: 11.18 MB / 4.07 GB, free: 180.8 MB / 0.8544 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.159/14.42, allocations: 309.6 MB / 4.372 GB, free: 159.7 MB / 0.8544 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05288/14.47, allocations: 2.481 MB / 4.374 GB, free: 159.7 MB / 0.8544 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.02055/14.49, allocations: 2.798 MB / 4.377 GB, free: 159.7 MB / 0.8544 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.06758/14.56, allocations: 18.34 MB / 4.395 GB, free: 153.9 MB / 0.8544 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02554/14.58, allocations: 3.172 MB / 4.398 GB, free: 153.9 MB / 0.8544 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.5272/15.11, allocations: 152.3 MB / 4.547 GB, free: 88.94 MB / 0.8544 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0006317/15.11, allocations: 364 kB / 4.547 GB, free: 88.58 MB / 0.8544 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0009595/15.11, allocations: 67.88 kB / 4.547 GB, free: 88.52 MB / 0.8544 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001921/15.11, allocations: 179.3 kB / 4.547 GB, free: 88.34 MB / 0.8544 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.108/16.22, allocations: 223.3 MB / 4.765 GB, free: 152 MB / 0.8544 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002526/16.22, allocations: 11.69 kB / 4.765 GB, free: 152 MB / 0.8544 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0332/16.25, allocations: 7.252 MB / 4.773 GB, free: 151.3 MB / 0.8544 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.05599/16.31, allocations: 39.75 MB / 4.811 GB, free: 137.9 MB / 0.8544 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01157/16.32, allocations: 1.45 MB / 4.813 GB, free: 136.9 MB / 0.8544 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.5435/16.86, allocations: 155.6 MB / 4.965 GB, free: 175.3 MB / 0.87 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.807e-06/16.86, allocations: 15.5 kB / 4.965 GB, free: 175.3 MB / 0.87 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.519/17.38, allocations: 200.2 MB / 5.16 GB, free: 130.5 MB / 0.87 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03186/17.42, allocations: 11.31 MB / 5.171 GB, free: 121.1 MB / 0.87 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01919/17.43, allocations: 0.9177 MB / 5.172 GB, free: 120.2 MB / 0.87 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03652/17.47, allocations: 1.549 MB / 5.174 GB, free: 118.6 MB / 0.87 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02258/17.49, allocations: 4.676 MB / 5.178 GB, free: 113.9 MB / 0.87 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01314/17.51, allocations: 1.386 MB / 5.18 GB, free: 112.5 MB / 0.87 GB
Notification: Performance of sorting global known variables: time 0.03603/17.54, allocations: 20.8 MB / 5.2 GB, free: 91.88 MB / 0.87 GB
Notification: Performance of sort global known variables: time 4.11e-07/17.54, allocations: 0 / 5.2 GB, free: 91.88 MB / 0.87 GB
Notification: Performance of remove unused functions: time 0.09061/17.63, allocations: 20.22 MB / 5.22 GB, free: 71.88 MB / 0.87 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.02731/17.66, allocations: 10.81 MB / 5.23 GB, free: 62.34 MB / 0.87 GB
Notification: Performance of simCode: created initialization part: time 0.5028/18.16, allocations: 85.29 MB / 5.314 GB, free: 246.7 MB / 0.87 GB
Notification: Performance of simCode: created event and clocks part: time 1.554e-05/18.16, allocations: 8.906 kB / 5.314 GB, free: 246.7 MB / 0.87 GB
Notification: Performance of simCode: created simulation system equations: time 0.1082/18.27, allocations: 54.53 MB / 5.367 GB, free: 241.3 MB / 0.87 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06581/18.34, allocations: 7.695 MB / 5.374 GB, free: 238.4 MB / 0.87 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.2587/18.6, allocations: 122.9 MB / 5.494 GB, free: 170.3 MB / 0.87 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.06054/18.66, allocations: 30.57 MB / 5.524 GB, free: 147.9 MB / 0.87 GB
Notification: Performance of simCode: alias equations: time 0.05289/18.71, allocations: 15.45 MB / 5.539 GB, free: 137.4 MB / 0.87 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02552/18.74, allocations: 4.253 MB / 5.543 GB, free: 133.8 MB / 0.87 GB
Notification: Performance of SimCode: time 2.053e-06/18.74, allocations: 0 / 5.543 GB, free: 133.8 MB / 0.87 GB
Notification: Performance of Templates: time 1.853/20.59, allocations: 1.017 GB / 6.56 GB, free: 87.57 MB / 0.87 GB
"
[Timeout remaining time 639]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -s cvode -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 45.55887165700551]
Failed to read output from testmodel.py, exit status != 0:
20.59564746997785 20.602342553 17.583739063
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x70b10c9b03e0>