Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001042/0.001042, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001507/0.001507, allocations: 173 kB / 23.49 MB, free: 1.059 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9821/0.9821, allocations: 177.1 MB / 203.8 MB, free: 5.598 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.577/1.577, allocations: 273.5 MB / 0.5213 GB, free: 14.88 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.303e-06/1.303e-06, allocations: 0 / 0.6463 GB, free: 38.96 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.673e-05/1.803e-05, allocations: 2.312 kB / 0.6463 GB, free: 38.96 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.01781/0.01783, allocations: 11.71 MB / 0.6577 GB, free: 31.28 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.006977/0.02481, allocations: 2.491 MB / 0.6602 GB, free: 29.54 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005424/0.02535, allocations: 23.62 kB / 0.6602 GB, free: 29.54 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.003461/0.02881, allocations: 305.3 kB / 0.6605 GB, free: 29.37 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001094/0.0299, allocations: 0.7738 MB / 0.6612 GB, free: 28.8 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008696/0.03077, allocations: 0.5918 MB / 0.6618 GB, free: 28.45 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001721/0.03249, allocations: 2.871 MB / 0.6646 GB, free: 26.91 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.001914/0.03441, allocations: 3.225 MB / 0.6678 GB, free: 24.99 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001623/0.03603, allocations: 2.561 MB / 0.6703 GB, free: 23.93 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002146/0.03818, allocations: 1.981 MB / 0.6722 GB, free: 23.39 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003945/0.03857, allocations: 425.8 kB / 0.6726 GB, free: 23.39 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004307/0.039, allocations: 430.8 kB / 0.673 GB, free: 23.39 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0004879/0.03949, allocations: 0.9249 MB / 0.6739 GB, free: 22.8 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0009654/0.04045, allocations: 1.299 MB / 0.6752 GB, free: 22.18 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002047/0.0425, allocations: 2.601 MB / 0.6777 GB, free: 20.91 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.829e-06/0.04251, allocations: 0 / 0.6777 GB, free: 20.91 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.343e-06/0.04251, allocations: 0 / 0.6777 GB, free: 20.91 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.949e-05/0.04253, allocations: 0 / 0.6777 GB, free: 20.91 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.003958/0.04649, allocations: 2.888 MB / 0.6805 GB, free: 18.93 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.012e-05/0.04653, allocations: 9.906 kB / 0.6805 GB, free: 18.93 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006387/0.04716, allocations: 377.2 kB / 0.6809 GB, free: 18.76 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001158/0.04832, allocations: 1.106 MB / 0.682 GB, free: 17.87 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.221e-05/0.04839, allocations: 135.9 kB / 0.6821 GB, free: 17.81 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003133/0.04871, allocations: 207.6 kB / 0.6823 GB, free: 17.73 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003077/0.05178, allocations: 3.049 MB / 0.6853 GB, free: 15.8 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.497e-05/0.05183, allocations: 16.09 kB / 0.6853 GB, free: 15.79 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002215/0.05205, allocations: 74 kB / 0.6854 GB, free: 15.74 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.232e-05/0.05208, allocations: 41.97 kB / 0.6854 GB, free: 15.74 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00261/0.05469, allocations: 2.006 MB / 0.6874 GB, free: 15.01 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008661/0.06335, allocations: 7.113 MB / 0.6943 GB, free: 9.09 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001392/0.06475, allocations: 1.083 MB / 0.6954 GB, free: 7.973 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009201/0.06567, allocations: 0.7341 MB / 0.6961 GB, free: 7.215 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.23e-05/0.06573, allocations: 38 kB / 0.6961 GB, free: 7.18 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001447/0.06718, allocations: 1.591 MB / 0.6977 GB, free: 5.492 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003677/0.07085, allocations: 1.857 MB / 0.6995 GB, free: 3.676 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.818e-06/0.07086, allocations: 0 / 0.6995 GB, free: 3.676 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.007382/0.07824, allocations: 5.502 MB / 0.7049 GB, free: 14.04 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001387/0.07838, allocations: 409.8 kB / 0.7053 GB, free: 13.55 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006961/0.07907, allocations: 0.8736 MB / 0.7061 GB, free: 12.65 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001694/0.07924, allocations: 77.69 kB / 0.7062 GB, free: 12.57 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003597/0.0796, allocations: 0.7429 MB / 0.7069 GB, free: 11.82 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004577/0.08006, allocations: 0.7244 MB / 0.7076 GB, free: 11.09 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006894/0.08075, allocations: 0.5838 MB / 0.7082 GB, free: 10.5 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 9.443e-05/0.08084, allocations: 480.7 kB / 0.7087 GB, free: 10.02 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001204/0.08205, allocations: 0.9839 MB / 0.7096 GB, free: 8.98 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001478/0.08353, allocations: 1.64 MB / 0.7112 GB, free: 6.992 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003881/0.08741, allocations: 3.385 MB / 0.7145 GB, free: 3.242 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.462e-06/0.08741, allocations: 4 kB / 0.7145 GB, free: 3.238 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.003747/0.09116, allocations: 3.048 MB / 0.7175 GB, free: 72 kB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001164/0.09128, allocations: 277.3 kB / 0.7178 GB, free: 15.75 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.306e-05/0.09129, allocations: 12 kB / 0.7178 GB, free: 15.73 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.504e-05/0.09132, allocations: 20 kB / 0.7178 GB, free: 15.71 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001842/0.09316, allocations: 0.8346 MB / 0.7186 GB, free: 14.88 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.251e-05/0.09318, allocations: 31.92 kB / 0.7186 GB, free: 14.85 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001027/0.09421, allocations: 95.95 kB / 0.7187 GB, free: 14.75 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002291/0.09444, allocations: 215.7 kB / 0.7189 GB, free: 14.54 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007323/0.09517, allocations: 0.5762 MB / 0.7195 GB, free: 13.96 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0005268/0.0957, allocations: 231 kB / 0.7197 GB, free: 13.73 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003486/0.09918, allocations: 2.715 MB / 0.7224 GB, free: 11.03 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.254e-05/0.09919, allocations: 23.94 kB / 0.7224 GB, free: 11.01 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.989e-06/0.0992, allocations: 0 / 0.7224 GB, free: 11.01 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.258e-05/0.09921, allocations: 11.97 kB / 0.7224 GB, free: 11 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004564/0.1038, allocations: 3.645 MB / 0.726 GB, free: 7.254 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.817e-06/0.1038, allocations: 0 / 0.726 GB, free: 7.254 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001362/0.1051, allocations: 447.3 kB / 0.7264 GB, free: 6.816 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.775e-06/0.1051, allocations: 4 kB / 0.7264 GB, free: 6.812 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001491/0.1053, allocations: 111.8 kB / 0.7265 GB, free: 6.703 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.831e-06/0.1053, allocations: 4 kB / 0.7265 GB, free: 6.699 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.704e-06/0.1053, allocations: 0 / 0.7265 GB, free: 6.699 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003896/0.1092, allocations: 3.11 MB / 0.7295 GB, free: 3.488 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.000581/0.1098, allocations: 386.6 kB / 0.7299 GB, free: 3.109 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002161/0.11, allocations: 63.89 kB / 0.73 GB, free: 3.047 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007838/0.1108, allocations: 83.5 kB / 0.7301 GB, free: 2.969 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002236/0.111, allocations: 157.7 kB / 0.7302 GB, free: 2.812 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001381/0.1111, allocations: 111.8 kB / 0.7303 GB, free: 2.703 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0004991/0.1116, allocations: 0.5959 MB / 0.7309 GB, free: 2.098 MB / 0.5574 GB Notification: Performance of sort global known variables: time 6.1e-08/0.1116, allocations: 0 / 0.7309 GB, free: 2.098 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001165/0.1128, allocations: 0.6328 MB / 0.7315 GB, free: 1.465 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002477/0.1131, allocations: 207.7 kB / 0.7317 GB, free: 1.258 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002803/0.1159, allocations: 2.681 MB / 0.7343 GB, free: 14.38 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 1.904e-06/0.1159, allocations: 0 / 0.7343 GB, free: 14.38 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.00121/0.1171, allocations: 1.191 MB / 0.7355 GB, free: 13.11 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001361/0.1184, allocations: 0.5741 MB / 0.7361 GB, free: 12.57 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006147/0.1246, allocations: 5.186 MB / 0.7411 GB, free: 7.477 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004898/0.1251, allocations: 0.7728 MB / 0.7419 GB, free: 6.664 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001132/0.1262, allocations: 375.9 kB / 0.7422 GB, free: 6.297 MB / 0.573 GB Notification: Performance of SimCode: time 1.864e-06/0.1262, allocations: 0 / 0.7422 GB, free: 6.297 MB / 0.573 GB Notification: Performance of Templates: time 0.02636/0.1526, allocations: 33.69 MB / 0.7751 GB, free: 5.242 MB / 0.6043 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.60055826487951]