Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001034/0.001034, allocations: 92.2 kB / 20.19 MB, free: 4.352 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001078/0.001078, allocations: 169 kB / 23.49 MB, free: 1.055 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9816/0.9816, allocations: 177.1 MB / 203.8 MB, free: 5.621 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.658/1.658, allocations: 273.5 MB / 0.5213 GB, free: 14.85 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.452e-06/1.452e-06, allocations: 0 / 0.6467 GB, free: 38.73 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.737e-05/1.882e-05, allocations: 6.312 kB / 0.6467 GB, free: 38.73 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen): time 0.004919/0.004938, allocations: 4.324 MB / 0.6509 GB, free: 35.92 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001981/0.006919, allocations: 1.185 MB / 0.6521 GB, free: 35.16 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002237/0.007142, allocations: 4.406 kB / 0.6521 GB, free: 35.16 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0004461/0.007588, allocations: 145.4 kB / 0.6522 GB, free: 35.1 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.000331/0.007919, allocations: 181 kB / 0.6524 GB, free: 35 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005735/0.008493, allocations: 215.5 kB / 0.6526 GB, free: 34.88 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.000561/0.009054, allocations: 0.5788 MB / 0.6532 GB, free: 34.57 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0001937/0.009248, allocations: 88.02 kB / 0.6532 GB, free: 34.52 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0003548/0.009602, allocations: 305.6 kB / 0.6535 GB, free: 34.4 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000316/0.009918, allocations: 191.9 kB / 0.6537 GB, free: 34.34 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 6.14e-05/0.00998, allocations: 38.78 kB / 0.6538 GB, free: 34.34 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002565/0.01024, allocations: 181.6 kB / 0.6539 GB, free: 34.29 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 9.396e-05/0.01033, allocations: 107 kB / 0.654 GB, free: 34.22 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0001852/0.01052, allocations: 176.3 kB / 0.6542 GB, free: 34.15 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0005676/0.01108, allocations: 0.5045 MB / 0.6547 GB, free: 33.92 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 1.943e-06/0.01108, allocations: 0 / 0.6547 GB, free: 33.92 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.002e-06/0.01109, allocations: 0 / 0.6547 GB, free: 33.92 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 7.104e-06/0.01109, allocations: 0 / 0.6547 GB, free: 33.92 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 81 * Number of variables: 81 Notification: Performance of Generate backend data structure: time 0.001112/0.0122, allocations: 0.983 MB / 0.6557 GB, free: 33.09 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.674e-05/0.01224, allocations: 10.09 kB / 0.6557 GB, free: 33.09 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003364/0.01258, allocations: 147.2 kB / 0.6558 GB, free: 33.03 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003396/0.01292, allocations: 296.4 kB / 0.6561 GB, free: 32.79 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.945e-05/0.01295, allocations: 25.75 kB / 0.6561 GB, free: 32.78 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 6.927e-05/0.01302, allocations: 41.05 kB / 0.6562 GB, free: 32.77 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.000651/0.01367, allocations: 461.3 kB / 0.6566 GB, free: 32.47 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.49e-05/0.01369, allocations: 10.59 kB / 0.6566 GB, free: 32.46 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.551e-05/0.01373, allocations: 15.5 kB / 0.6566 GB, free: 32.46 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.957e-05/0.01375, allocations: 7.688 kB / 0.6566 GB, free: 32.46 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004529/0.0142, allocations: 313.4 kB / 0.6569 GB, free: 32.27 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001543/0.01574, allocations: 1.051 MB / 0.658 GB, free: 31.55 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0003753/0.01612, allocations: 345 kB / 0.6583 GB, free: 31.31 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001517/0.01627, allocations: 244.6 kB / 0.6585 GB, free: 31.12 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 2.268e-05/0.01629, allocations: 7.391 kB / 0.6585 GB, free: 31.12 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004206/0.01671, allocations: 0.5373 MB / 0.659 GB, free: 30.68 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=52): time 2.204e-06/0.01672, allocations: 1.406 kB / 0.659 GB, free: 30.68 MB / 0.5262 GB Notification: Performance of matching and sorting (n=55): time 0.002062/0.01878, allocations: 1.819 MB / 0.6608 GB, free: 29.39 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.152e-05/0.01886, allocations: 362.9 kB / 0.6612 GB, free: 28.97 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003614/0.01922, allocations: 431.1 kB / 0.6616 GB, free: 28.72 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 3.455e-05/0.01925, allocations: 39.3 kB / 0.6616 GB, free: 28.68 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001429/0.0194, allocations: 286 kB / 0.6619 GB, free: 28.44 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001291/0.01953, allocations: 179.5 kB / 0.6621 GB, free: 28.3 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001804/0.01971, allocations: 113.3 kB / 0.6622 GB, free: 28.23 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001153/0.01982, allocations: 0.5421 MB / 0.6627 GB, free: 27.71 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003265/0.02015, allocations: 289.5 kB / 0.663 GB, free: 27.49 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003223/0.02047, allocations: 468.5 kB / 0.6634 GB, free: 27.03 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0005175/0.02099, allocations: 0.9557 MB / 0.6644 GB, free: 26.18 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.906e-06/0.02099, allocations: 1.375 kB / 0.6644 GB, free: 26.18 MB / 0.5262 GB Notification: Performance of matching and sorting (n=79) (initialization): time 0.0006469/0.02164, allocations: 0.8671 MB / 0.6652 GB, free: 25.61 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 5.143e-05/0.02169, allocations: 175.8 kB / 0.6654 GB, free: 25.41 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.602e-06/0.0217, allocations: 2.875 kB / 0.6654 GB, free: 25.41 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.783e-05/0.02171, allocations: 11 kB / 0.6654 GB, free: 25.41 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002544/0.02197, allocations: 127 kB / 0.6655 GB, free: 25.39 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.868e-06/0.02198, allocations: 7.156 kB / 0.6655 GB, free: 25.39 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001356/0.02211, allocations: 24 kB / 0.6655 GB, free: 25.39 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.055e-05/0.02218, allocations: 60.34 kB / 0.6656 GB, free: 25.38 MB / 0.5262 GB Warning: Assuming fixed start value for the following 14 variables: central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 16 * Number of states: 0 () * Number of discrete variables: 31 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,CYP2C19.status,SLC22A2.status,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (73): * Single equations (assignments): 67 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0002245/0.02241, allocations: 407.2 kB / 0.666 GB, free: 25.02 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001194/0.02253, allocations: 128.5 kB / 0.6661 GB, free: 24.97 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 4.645e-05/0.02258, allocations: 45.88 kB / 0.6661 GB, free: 24.93 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.419e-06/0.02258, allocations: 6.281 kB / 0.6662 GB, free: 24.93 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.671e-06/0.02259, allocations: 4.344 kB / 0.6662 GB, free: 24.93 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.299e-06/0.02259, allocations: 3.047 kB / 0.6662 GB, free: 24.93 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0009253/0.02352, allocations: 1.27 MB / 0.6674 GB, free: 24.09 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.923e-06/0.02352, allocations: 0 / 0.6674 GB, free: 24.09 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002129/0.02373, allocations: 77.14 kB / 0.6675 GB, free: 24.08 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.15e-06/0.02374, allocations: 4.062 kB / 0.6675 GB, free: 24.08 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.718e-05/0.02376, allocations: 20.31 kB / 0.6675 GB, free: 24.07 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.176e-06/0.02377, allocations: 1.406 kB / 0.6675 GB, free: 24.07 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.82e-07/0.02377, allocations: 1 kB / 0.6675 GB, free: 24.07 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000822/0.02459, allocations: 1.253 MB / 0.6687 GB, free: 23.21 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001063/0.0247, allocations: 83.98 kB / 0.6688 GB, free: 23.17 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.874e-05/0.02474, allocations: 20.91 kB / 0.6688 GB, free: 23.16 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001151/0.02486, allocations: 24.03 kB / 0.6688 GB, free: 23.16 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 8.024e-05/0.02494, allocations: 50.44 kB / 0.6689 GB, free: 23.14 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.989e-05/0.02499, allocations: 53.5 kB / 0.6689 GB, free: 23.14 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001563/0.02515, allocations: 279.4 kB / 0.6692 GB, free: 22.98 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7.1e-08/0.02515, allocations: 0 / 0.6692 GB, free: 22.98 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0003253/0.02547, allocations: 143.2 kB / 0.6693 GB, free: 22.96 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 9 (central.C,central.AUC,elim.MExc,periodicDose.TotalCumulativeMass,periodicDose.absorptionLumen.C,periodicDose.absorptionLumen.AUC,periodicDose.variableDose.TotalCumulativeMass,peripheral.C,peripheral.AUC) * Number of discrete variables: 20 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,central.Cmax,central.Cmin,central.rising,periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.rising,periodicDose.pulse.T_start,periodicDose.pulse.count,peripheral.Cmax,peripheral.Cmin,peripheral.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 18 (periodicDose.pulse.count,CYP2C19.status,SLC22A2.status,peripheral.Cmin,$whenCondition6,peripheral.Cmax,$whenCondition5,peripheral.rising,periodicDose.absorptionLumen.Cmin,$whenCondition4,periodicDose.absorptionLumen.Cmax,$whenCondition3,periodicDose.absorptionLumen.rising,central.Cmin,$whenCondition2,central.Cmax,$whenCondition1,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (44): * Single equations (assignments): 37 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002067/0.02568, allocations: 175.4 kB / 0.6695 GB, free: 22.85 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0006533/0.02633, allocations: 0.9656 MB / 0.6705 GB, free: 22.04 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 3.466e-06/0.02633, allocations: 4.125 kB / 0.6705 GB, free: 22.04 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0004639/0.0268, allocations: 0.5918 MB / 0.671 GB, free: 21.52 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006309/0.02743, allocations: 139.6 kB / 0.6712 GB, free: 21.48 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001949/0.02938, allocations: 1.423 MB / 0.6726 GB, free: 20.54 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001454/0.02952, allocations: 249.5 kB / 0.6728 GB, free: 20.44 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 7.361e-05/0.0296, allocations: 40.69 kB / 0.6728 GB, free: 20.43 MB / 0.5262 GB Notification: Performance of SimCode: time 9.32e-07/0.0296, allocations: 0 / 0.6728 GB, free: 20.43 MB / 0.5262 GB Notification: Performance of Templates: time 0.00699/0.03659, allocations: 6.748 MB / 0.6794 GB, free: 19.41 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile clang++ -Winvalid-pch -DOMC_BUILD -DUSE_THREAD -fPIC -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"" -I"" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp52); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.222799870884046]