Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009755/0.0009755, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001024/0.001024, allocations: 173 kB / 23.5 MB, free: 1.055 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9337/0.9337, allocations: 177.1 MB / 203.8 MB, free: 5.656 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.539/1.539, allocations: 273.5 MB / 0.5213 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.422e-06/1.422e-06, allocations: 0 / 0.6462 GB, free: 39.18 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.326e-05/1.468e-05, allocations: 2.312 kB / 0.6462 GB, free: 39.17 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium): time 0.002604/0.002619, allocations: 2.909 MB / 0.6491 GB, free: 37.3 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001299/0.003917, allocations: 1.056 MB / 0.6501 GB, free: 36.62 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001236/0.004041, allocations: 5.438 kB / 0.6501 GB, free: 36.62 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003546/0.004396, allocations: 127.8 kB / 0.6502 GB, free: 36.57 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0001837/0.004579, allocations: 113.2 kB / 0.6503 GB, free: 36.53 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004433/0.005022, allocations: 181.7 kB / 0.6505 GB, free: 36.44 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0003383/0.005361, allocations: 414.6 kB / 0.6509 GB, free: 36.23 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.000142/0.005503, allocations: 65.22 kB / 0.651 GB, free: 36.19 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001809/0.005684, allocations: 207.8 kB / 0.6512 GB, free: 36.11 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0001641/0.005848, allocations: 131.8 kB / 0.6513 GB, free: 36.06 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 4.01e-05/0.005888, allocations: 28.81 kB / 0.6513 GB, free: 36.06 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001802/0.006068, allocations: 181.3 kB / 0.6515 GB, free: 36 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 7.483e-05/0.006143, allocations: 86.72 kB / 0.6516 GB, free: 35.95 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0001074/0.00625, allocations: 117.5 kB / 0.6517 GB, free: 35.9 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0003823/0.006633, allocations: 415.9 kB / 0.6521 GB, free: 35.71 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.004e-06/0.006635, allocations: 3.469 kB / 0.6521 GB, free: 35.71 MB / 0.5262 GB Notification: Performance of FrontEnd: time 6.01e-07/0.006635, allocations: 0 / 0.6521 GB, free: 35.71 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 5.741e-06/0.006641, allocations: 0 / 0.6521 GB, free: 35.71 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 58 * Number of variables: 58 Notification: Performance of Generate backend data structure: time 0.0007044/0.007345, allocations: 0.8205 MB / 0.6529 GB, free: 34.99 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.301e-05/0.007378, allocations: 12.31 kB / 0.6529 GB, free: 34.99 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002514/0.00763, allocations: 127.5 kB / 0.653 GB, free: 34.95 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002189/0.007849, allocations: 239.6 kB / 0.6533 GB, free: 34.74 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.957e-05/0.007868, allocations: 18.59 kB / 0.6533 GB, free: 34.73 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 3.935e-05/0.007908, allocations: 31.75 kB / 0.6533 GB, free: 34.72 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003159/0.008223, allocations: 322.9 kB / 0.6536 GB, free: 34.51 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 1.639e-05/0.00824, allocations: 14.05 kB / 0.6536 GB, free: 34.5 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.923e-05/0.008259, allocations: 8 kB / 0.6536 GB, free: 34.49 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.618e-06/0.008269, allocations: 5.875 kB / 0.6536 GB, free: 34.49 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002063/0.008475, allocations: 243.9 kB / 0.6539 GB, free: 34.35 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006895/0.009165, allocations: 0.6349 MB / 0.6545 GB, free: 33.91 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0003884/0.009553, allocations: 288.8 kB / 0.6548 GB, free: 33.7 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001291/0.009682, allocations: 195.3 kB / 0.655 GB, free: 33.55 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 2.175e-05/0.009704, allocations: 5.688 kB / 0.655 GB, free: 33.55 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002504/0.009954, allocations: 422.6 kB / 0.6554 GB, free: 33.2 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=39): time 1.944e-06/0.009956, allocations: 0 / 0.6554 GB, free: 33.2 MB / 0.5262 GB Notification: Performance of matching and sorting (n=41): time 0.001491/0.01145, allocations: 1.446 MB / 0.6568 GB, free: 32.14 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 5.634e-05/0.0115, allocations: 279 kB / 0.657 GB, free: 31.82 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002022/0.01171, allocations: 352.4 kB / 0.6574 GB, free: 31.6 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 2.425e-05/0.01173, allocations: 38.8 kB / 0.6574 GB, free: 31.56 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 8.358e-05/0.01181, allocations: 230.2 kB / 0.6576 GB, free: 31.36 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 5.882e-05/0.01187, allocations: 135.6 kB / 0.6578 GB, free: 31.26 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 8.552e-05/0.01196, allocations: 84.22 kB / 0.6578 GB, free: 31.21 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 7.442e-05/0.01203, allocations: 0.532 MB / 0.6584 GB, free: 30.69 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001495/0.01218, allocations: 239.3 kB / 0.6586 GB, free: 30.49 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000205/0.01239, allocations: 359.1 kB / 0.6589 GB, free: 30.15 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0004524/0.01284, allocations: 0.7386 MB / 0.6597 GB, free: 29.49 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.964e-06/0.01284, allocations: 0 / 0.6597 GB, free: 29.49 MB / 0.5262 GB Notification: Performance of matching and sorting (n=57) (initialization): time 0.0005401/0.01338, allocations: 0.6955 MB / 0.6603 GB, free: 29.02 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 4.085e-05/0.01342, allocations: 146.1 kB / 0.6605 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.262e-06/0.01343, allocations: 2.75 kB / 0.6605 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.5e-05/0.01344, allocations: 6.844 kB / 0.6605 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001972/0.01364, allocations: 79.64 kB / 0.6606 GB, free: 28.86 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.856e-06/0.01365, allocations: 12.05 kB / 0.6606 GB, free: 28.85 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001143/0.01376, allocations: 19.44 kB / 0.6606 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.518e-05/0.01382, allocations: 58.58 kB / 0.6606 GB, free: 28.84 MB / 0.5262 GB Warning: Assuming fixed start value for the following 10 variables: dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.rising:DISCRETE(fixed = true protected = true ) type: Boolean dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 10 * Number of states: 0 () * Number of discrete variables: 23 ($PRE.dose.absorptionLumen.Cmin,dose.absorptionLumen.Cmin,$PRE.dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.central.rising,$PRE.dose.pulse.count,$PRE.dose.pulse.T_start,$PRE.dose.absorptionLumen.rising,CYP2C19.status,SLC22A2.status,central.rising,dose.pulse.count,dose.pulse.T_start,dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (52): * Single equations (assignments): 47 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001848/0.014, allocations: 355 kB / 0.661 GB, free: 28.51 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001038/0.01411, allocations: 98.36 kB / 0.6611 GB, free: 28.48 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 4.023e-05/0.01415, allocations: 37.2 kB / 0.6611 GB, free: 28.45 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.735e-06/0.01415, allocations: 4.219 kB / 0.6611 GB, free: 28.45 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 6.843e-06/0.01416, allocations: 0 / 0.6611 GB, free: 28.45 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.062e-06/0.01416, allocations: 4.906 kB / 0.6611 GB, free: 28.45 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0007413/0.0149, allocations: 1.016 MB / 0.6621 GB, free: 27.73 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.695e-06/0.01491, allocations: 1.438 kB / 0.6621 GB, free: 27.73 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001756/0.01508, allocations: 63.5 kB / 0.6622 GB, free: 27.72 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 3.437e-06/0.01509, allocations: 1.438 kB / 0.6622 GB, free: 27.72 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.343e-05/0.01511, allocations: 14.7 kB / 0.6622 GB, free: 27.72 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.825e-06/0.01511, allocations: 1.375 kB / 0.6622 GB, free: 27.72 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.183e-06/0.01511, allocations: 0 / 0.6622 GB, free: 27.72 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0006815/0.0158, allocations: 1.028 MB / 0.6632 GB, free: 27 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 8.733e-05/0.01588, allocations: 68.45 kB / 0.6633 GB, free: 26.96 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.919e-05/0.01592, allocations: 16.41 kB / 0.6633 GB, free: 26.95 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001013/0.01602, allocations: 17.08 kB / 0.6633 GB, free: 26.95 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 6.832e-05/0.01609, allocations: 33.31 kB / 0.6633 GB, free: 26.94 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.633e-05/0.01614, allocations: 54.59 kB / 0.6634 GB, free: 26.93 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001201/0.01626, allocations: 230.7 kB / 0.6636 GB, free: 26.79 MB / 0.5262 GB Notification: Performance of sort global known variables: time 8e-08/0.01626, allocations: 1.344 kB / 0.6636 GB, free: 26.79 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.000284/0.01654, allocations: 107 kB / 0.6637 GB, free: 26.77 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 7 (dose.TotalCumulativeMass,dose.absorptionLumen.C,dose.absorptionLumen.AUC,dose.variableDose.TotalCumulativeMass,central.C,central.AUC,elim.MExc) * Number of discrete variables: 15 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmin,dose.absorptionLumen.rising,dose.pulse.T_start,dose.pulse.count,central.Cmax,central.Cmin,central.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 13 (dose.pulse.count,SLC22A2.status,CYP2C19.status,dose.absorptionLumen.Cmin,$whenCondition5,dose.absorptionLumen.Cmax,$whenCondition4,dose.absorptionLumen.rising,central.Cmin,$whenCondition3,central.Cmax,$whenCondition2,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (33): * Single equations (assignments): 27 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000187/0.01673, allocations: 169.2 kB / 0.6639 GB, free: 26.67 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0004318/0.01716, allocations: 0.7843 MB / 0.6646 GB, free: 26 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.422e-06/0.01716, allocations: 0 / 0.6646 GB, free: 26 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0002007/0.01736, allocations: 480.1 kB / 0.6651 GB, free: 25.58 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003374/0.0177, allocations: 94.41 kB / 0.6652 GB, free: 25.56 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00165/0.01935, allocations: 1.114 MB / 0.6663 GB, free: 24.81 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001217/0.01947, allocations: 210.9 kB / 0.6665 GB, free: 24.71 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 6.264e-05/0.01953, allocations: 26.78 kB / 0.6665 GB, free: 24.7 MB / 0.5262 GB Notification: Performance of SimCode: time 5.21e-07/0.01954, allocations: 5.469 kB / 0.6665 GB, free: 24.7 MB / 0.5262 GB Notification: Performance of Templates: time 0.006741/0.02628, allocations: 5.093 MB / 0.6715 GB, free: 24.23 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile clang++ -Winvalid-pch -DOMC_BUILD -DUSE_THREAD -fPIC -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"" -I"" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.060074967099354]