Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001019/0.001019, allocations: 92.2 kB / 20.19 MB, free: 4.359 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001868/0.001868, allocations: 173 kB / 23.49 MB, free: 1.055 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9495/0.9495, allocations: 177.1 MB / 203.8 MB, free: 5.594 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.638/1.638, allocations: 273.5 MB / 0.5213 GB, free: 14.83 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.305e-06/2.305e-06, allocations: 0 / 0.6462 GB, free: 39.05 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.276e-05/2.507e-05, allocations: 4.281 kB / 0.6462 GB, free: 39.05 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic): time 0.009358/0.009383, allocations: 15.38 MB / 0.6612 GB, free: 29.04 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.006699/0.01608, allocations: 3.436 MB / 0.6646 GB, free: 26.64 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.002308/0.01839, allocations: 28 kB / 0.6646 GB, free: 26.64 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.001271/0.01966, allocations: 0.5045 MB / 0.6651 GB, free: 26.37 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.00235/0.02201, allocations: 1.086 MB / 0.6662 GB, free: 25.59 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001511/0.02352, allocations: 0.9227 MB / 0.6671 GB, free: 24.98 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.00329/0.02681, allocations: 3.89 MB / 0.6709 GB, free: 22.8 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0007263/0.02754, allocations: 0.5358 MB / 0.6714 GB, free: 22.48 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002504/0.03004, allocations: 1.957 MB / 0.6733 GB, free: 21.59 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001445/0.03149, allocations: 1.164 MB / 0.6744 GB, free: 21.17 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003267/0.03181, allocations: 332.7 kB / 0.6747 GB, free: 21.17 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0006791/0.03249, allocations: 484.8 kB / 0.6752 GB, free: 21.11 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0003926/0.03289, allocations: 0.7106 MB / 0.6759 GB, free: 20.63 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0009487/0.03384, allocations: 1.125 MB / 0.677 GB, free: 20.11 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002507/0.03634, allocations: 2.665 MB / 0.6796 GB, free: 18.7 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 6.152e-06/0.03635, allocations: 4.938 kB / 0.6796 GB, free: 18.69 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.703e-06/0.03635, allocations: 0 / 0.6796 GB, free: 18.69 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 4.012e-05/0.03639, allocations: 0 / 0.6796 GB, free: 18.69 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 486 * Number of variables: 486 Notification: Performance of Generate backend data structure: time 0.003825/0.04022, allocations: 4.369 MB / 0.6839 GB, free: 15.37 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.116e-05/0.04026, allocations: 10.58 kB / 0.6839 GB, free: 15.37 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001162/0.04142, allocations: 0.9141 MB / 0.6848 GB, free: 15 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001349/0.04277, allocations: 1.318 MB / 0.6861 GB, free: 14.09 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.436e-05/0.04285, allocations: 146.7 kB / 0.6862 GB, free: 14.03 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002454/0.0431, allocations: 225 kB / 0.6864 GB, free: 13.96 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002507/0.0456, allocations: 2.504 MB / 0.6889 GB, free: 12.37 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.136e-05/0.04567, allocations: 33.02 kB / 0.6889 GB, free: 12.35 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001213/0.04579, allocations: 80.56 kB / 0.689 GB, free: 12.29 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.746e-05/0.04582, allocations: 44.84 kB / 0.689 GB, free: 12.29 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001644/0.04747, allocations: 1.909 MB / 0.6909 GB, free: 10.87 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006069/0.05354, allocations: 6.157 MB / 0.6969 GB, free: 5.879 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001586/0.05512, allocations: 2.02 MB / 0.6989 GB, free: 3.617 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000779/0.0559, allocations: 1.422 MB / 0.7003 GB, free: 1.992 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 7.506e-05/0.05598, allocations: 47.73 kB / 0.7003 GB, free: 1.945 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001888/0.05786, allocations: 3.209 MB / 0.7034 GB, free: 14.28 MB / 0.5418 GB Notification: Performance of pre-optimization done (n=300): time 4.869e-06/0.05787, allocations: 0 / 0.7034 GB, free: 14.28 MB / 0.5418 GB Notification: Performance of matching and sorting (n=318): time 0.01169/0.06956, allocations: 12.63 MB / 0.7158 GB, free: 0.5898 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0006289/0.07019, allocations: 1.983 MB / 0.7177 GB, free: 14.16 MB / 0.5574 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001816/0.072, allocations: 1.83 MB / 0.7195 GB, free: 12.29 MB / 0.5574 GB Notification: Performance of collectPreVariables (initialization): time 0.0002131/0.07222, allocations: 121.7 kB / 0.7196 GB, free: 12.16 MB / 0.5574 GB Notification: Performance of collectInitialEqns (initialization): time 0.0006919/0.07291, allocations: 1.156 MB / 0.7207 GB, free: 11 MB / 0.5574 GB Notification: Performance of collectInitialBindings (initialization): time 0.0006343/0.07354, allocations: 1.019 MB / 0.7217 GB, free: 9.969 MB / 0.5574 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0008236/0.07437, allocations: 0.535 MB / 0.7222 GB, free: 9.422 MB / 0.5574 GB Notification: Performance of setup shared object (initialization): time 9.614e-05/0.07446, allocations: 484.7 kB / 0.7227 GB, free: 8.945 MB / 0.5574 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001272/0.07573, allocations: 1.685 MB / 0.7244 GB, free: 7.031 MB / 0.5574 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001739/0.07747, allocations: 2.741 MB / 0.727 GB, free: 3.609 MB / 0.5574 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004307/0.08178, allocations: 5.747 MB / 0.7326 GB, free: 12.83 MB / 0.573 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.462e-05/0.0818, allocations: 4 kB / 0.7326 GB, free: 12.83 MB / 0.573 GB Notification: Performance of matching and sorting (n=462) (initialization): time 0.004978/0.08678, allocations: 5.13 MB / 0.7377 GB, free: 7.254 MB / 0.573 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003461/0.08713, allocations: 1.021 MB / 0.7387 GB, free: 6.012 MB / 0.573 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.253e-05/0.08715, allocations: 20 kB / 0.7387 GB, free: 5.992 MB / 0.573 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.769e-05/0.08719, allocations: 39.94 kB / 0.7387 GB, free: 5.953 MB / 0.573 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001334/0.08852, allocations: 0.6748 MB / 0.7394 GB, free: 5.277 MB / 0.573 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.672e-05/0.08856, allocations: 55.8 kB / 0.7394 GB, free: 5.223 MB / 0.573 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001403/0.08996, allocations: 151.2 kB / 0.7396 GB, free: 5.078 MB / 0.573 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003398/0.0903, allocations: 408.8 kB / 0.74 GB, free: 4.684 MB / 0.573 GB Warning: Assuming fixed start value for the following 84 variables: patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 186 ($PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (426): * Single equations (assignments): 390 * Array equations: 0 * Algorithm blocks: 36 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001761/0.09206, allocations: 1.653 MB / 0.7416 GB, free: 2.887 MB / 0.573 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0009323/0.093, allocations: 0.7557 MB / 0.7423 GB, free: 2.129 MB / 0.573 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000314/0.09331, allocations: 263.5 kB / 0.7426 GB, free: 1.863 MB / 0.573 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.512e-05/0.09332, allocations: 27.94 kB / 0.7426 GB, free: 1.836 MB / 0.573 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.109e-05/0.09335, allocations: 7.984 kB / 0.7426 GB, free: 1.828 MB / 0.573 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.52e-05/0.09336, allocations: 11.95 kB / 0.7426 GB, free: 1.816 MB / 0.573 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007014/0.1004, allocations: 7.304 MB / 0.7497 GB, free: 10.11 MB / 0.5887 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.412e-06/0.1004, allocations: 3.984 kB / 0.7497 GB, free: 10.1 MB / 0.5887 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001144/0.1015, allocations: 447.4 kB / 0.7502 GB, free: 9.664 MB / 0.5887 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.027e-06/0.1015, allocations: 8 kB / 0.7502 GB, free: 9.656 MB / 0.5887 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001526/0.1017, allocations: 127.9 kB / 0.7503 GB, free: 9.531 MB / 0.5887 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.047e-05/0.1017, allocations: 15.88 kB / 0.7503 GB, free: 9.516 MB / 0.5887 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.176e-06/0.1017, allocations: 4 kB / 0.7503 GB, free: 9.512 MB / 0.5887 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.005692/0.1074, allocations: 7.302 MB / 0.7575 GB, free: 1.602 MB / 0.5887 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001041/0.1084, allocations: 0.5915 MB / 0.758 GB, free: 1.008 MB / 0.5887 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003797/0.1088, allocations: 136 kB / 0.7582 GB, free: 0.875 MB / 0.5887 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007105/0.1095, allocations: 103.9 kB / 0.7583 GB, free: 0.7734 MB / 0.5887 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003434/0.1099, allocations: 263.3 kB / 0.7585 GB, free: 0.5156 MB / 0.5887 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002851/0.1102, allocations: 377.7 kB / 0.7589 GB, free: 152 kB / 0.5887 GB Notification: Performance of sorting global known variables: time 0.001169/0.1113, allocations: 1.046 MB / 0.7599 GB, free: 15.09 MB / 0.6043 GB Notification: Performance of sort global known variables: time 2.2e-07/0.1113, allocations: 0 / 0.7599 GB, free: 15.09 MB / 0.6043 GB Notification: Performance of remove unused functions: time 0.001866/0.1132, allocations: 0.7695 MB / 0.7606 GB, free: 14.32 MB / 0.6043 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 54 (patient_high.central.C,patient_high.central.AUC,patient_high.elim.MExc,patient_high.periodicDose.TotalCumulativeMass,patient_high.periodicDose.absorptionLumen.C,patient_high.periodicDose.absorptionLumen.AUC,patient_high.periodicDose.variableDose.TotalCumulativeMass,patient_high.peripheral.C,patient_high.peripheral.AUC,patient_low.central.C,patient_low.central.AUC,patient_low.elim.MExc,patient_low.periodicDose.TotalCumulativeMass,patient_low.periodicDose.absorptionLumen.C,patient_low.periodicDose.absorptionLumen.AUC,patient_low.periodicDose.variableDose.TotalCumulativeMass,patient_low.peripheral.C,patient_low.peripheral.AUC,patient.central.C,patient.central.AUC,patient.elim.MExc,patient.periodicDose.TotalCumulativeMass,patient.periodicDose.absorptionLumen.C,patient.periodicDose.absorptionLumen.AUC,patient.periodicDose.variableDose.TotalCumulativeMass,patient.peripheral.C,patient.peripheral.AUC,ref_high.central.C,ref_high.central.AUC,ref_high.elim.MExc,ref_high.periodicDose.TotalCumulativeMass,ref_high.periodicDose.absorptionLumen.C,ref_high.periodicDose.absorptionLumen.AUC,ref_high.periodicDose.variableDose.TotalCumulativeMass,ref_high.peripheral.C,ref_high.peripheral.AUC,ref_low.central.C,ref_low.central.AUC,ref_low.elim.MExc,ref_low.periodicDose.TotalCumulativeMass,ref_low.periodicDose.absorptionLumen.C,ref_low.periodicDose.absorptionLumen.AUC,ref_low.periodicDose.variableDose.TotalCumulativeMass,ref_low.peripheral.C,ref_low.peripheral.AUC,ref.central.C,ref.central.AUC,ref.elim.MExc,ref.periodicDose.TotalCumulativeMass,ref.periodicDose.absorptionLumen.C,ref.periodicDose.absorptionLumen.AUC,ref.periodicDose.variableDose.TotalCumulativeMass,ref.peripheral.C,ref.peripheral.AUC) * Number of discrete variables: 120 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,patient_high.central.Cmax,patient_high.central.Cmin,patient_high.central.rising,patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.rising,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmax,patient_high.peripheral.Cmin,patient_high.peripheral.rising,patient_high.SLC22A2.status,patient_high.CYP2C19.status,$whenCondition14,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13,patient_low.central.Cmax,patient_low.central.Cmin,patient_low.central.rising,patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.rising,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmax,patient_low.peripheral.Cmin,patient_low.peripheral.rising,patient_low.SLC22A2.status,patient_low.CYP2C19.status,$whenCondition21,$whenCondition15,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient.central.Cmax,patient.central.Cmin,patient.central.rising,patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.rising,patient.periodicDose.pulse.T_start,patient.periodicDose.pulse.count,patient.peripheral.Cmax,patient.peripheral.Cmin,patient.peripheral.rising,patient.SLC22A2.status,patient.CYP2C19.status,$whenCondition28,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,$whenCondition26,$whenCondition27,ref_high.central.Cmax,ref_high.central.Cmin,ref_high.central.rising,ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.rising,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmax,ref_high.peripheral.Cmin,ref_high.peripheral.rising,ref_high.SLC22A2.status,ref_high.CYP2C19.status,$whenCondition35,$whenCondition29,$whenCondition30,$whenCondition31,$whenCondition32,$whenCondition33,$whenCondition34,ref_low.central.Cmax,ref_low.central.Cmin,ref_low.central.rising,ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.rising,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmax,ref_low.peripheral.Cmin,ref_low.peripheral.rising,ref_low.SLC22A2.status,ref_low.CYP2C19.status,$whenCondition42,$whenCondition36,$whenCondition37,$whenCondition38,$whenCondition39,$whenCondition40,$whenCondition41,ref.central.Cmax,ref.central.Cmin,ref.central.rising,ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.rising,ref.periodicDose.pulse.T_start,ref.periodicDose.pulse.count,ref.peripheral.Cmax,ref.peripheral.Cmin,ref.peripheral.rising,ref.SLC22A2.status,ref.CYP2C19.status) * Number of discrete states: 108 (ref.periodicDose.pulse.count,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.Cmin,$whenCondition41,ref.peripheral.Cmax,$whenCondition40,ref.peripheral.rising,ref.periodicDose.absorptionLumen.Cmin,$whenCondition39,ref.periodicDose.absorptionLumen.Cmax,$whenCondition38,ref.periodicDose.absorptionLumen.rising,ref.central.Cmin,$whenCondition37,ref.central.Cmax,$whenCondition36,ref.central.rising,ref_low.periodicDose.pulse.count,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.Cmin,$whenCondition34,ref_low.peripheral.Cmax,$whenCondition33,ref_low.peripheral.rising,ref_low.periodicDose.absorptionLumen.Cmin,$whenCondition32,ref_low.periodicDose.absorptionLumen.Cmax,$whenCondition31,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.Cmin,$whenCondition30,ref_low.central.Cmax,$whenCondition29,ref_low.central.rising,ref_high.periodicDose.pulse.count,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.Cmin,$whenCondition27,ref_high.peripheral.Cmax,$whenCondition26,ref_high.peripheral.rising,ref_high.periodicDose.absorptionLumen.Cmin,$whenCondition25,ref_high.periodicDose.absorptionLumen.Cmax,$whenCondition24,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.Cmin,$whenCondition23,ref_high.central.Cmax,$whenCondition22,ref_high.central.rising,patient.periodicDose.pulse.count,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.Cmin,$whenCondition20,patient.peripheral.Cmax,$whenCondition19,patient.peripheral.rising,patient.periodicDose.absorptionLumen.Cmin,$whenCondition18,patient.periodicDose.absorptionLumen.Cmax,$whenCondition17,patient.periodicDose.absorptionLumen.rising,patient.central.Cmin,$whenCondition16,patient.central.Cmax,$whenCondition15,patient.central.rising,patient_low.periodicDose.pulse.count,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.Cmin,$whenCondition13,patient_low.peripheral.Cmax,$whenCondition12,patient_low.peripheral.rising,patient_low.periodicDose.absorptionLumen.Cmin,$whenCondition11,patient_low.periodicDose.absorptionLumen.Cmax,$whenCondition10,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.Cmin,$whenCondition9,patient_low.central.Cmax,$whenCondition8,patient_low.central.rising,patient_high.periodicDose.pulse.count,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.Cmin,$whenCondition6,patient_high.peripheral.Cmax,$whenCondition5,patient_high.peripheral.rising,patient_high.periodicDose.absorptionLumen.Cmin,$whenCondition4,patient_high.periodicDose.absorptionLumen.Cmax,$whenCondition3,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.Cmin,$whenCondition2,patient_high.central.Cmax,$whenCondition1,patient_high.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (252): * Single equations (assignments): 210 * Array equations: 0 * Algorithm blocks: 30 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0005004/0.1137, allocations: 417.4 kB / 0.761 GB, free: 13.91 MB / 0.6043 GB Notification: Performance of simCode: created initialization part: time 0.004315/0.118, allocations: 5.812 MB / 0.7667 GB, free: 7.254 MB / 0.6043 GB Notification: Performance of simCode: created event and clocks part: time 3.105e-06/0.118, allocations: 0 / 0.7667 GB, free: 7.254 MB / 0.6043 GB Notification: Performance of simCode: created simulation system equations: time 0.002401/0.1204, allocations: 3.546 MB / 0.7702 GB, free: 3.152 MB / 0.6043 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00274/0.1231, allocations: 0.824 MB / 0.771 GB, free: 2.379 MB / 0.6043 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.008491/0.1316, allocations: 7.69 MB / 0.7785 GB, free: 10.54 MB / 0.6199 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009203/0.1326, allocations: 1.253 MB / 0.7797 GB, free: 9.242 MB / 0.6199 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004865/0.133, allocations: 188.5 kB / 0.7799 GB, free: 9.059 MB / 0.6199 GB Notification: Performance of SimCode: time 1.854e-06/0.133, allocations: 0 / 0.7799 GB, free: 9.059 MB / 0.6199 GB Notification: Performance of Templates: time 0.044/0.177, allocations: 40.43 MB / 0.8194 GB, free: 1.543 MB / 0.6512 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile clang++ -Winvalid-pch -DOMC_BUILD -DUSE_THREAD -fPIC -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"" -I"" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:209: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:973:36: note: '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_' declared here 973 | StatArrayDim1 _patient_low_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1130:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1130 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp17); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.35728884791024]