Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009601/0.0009601, allocations: 92.2 kB / 20.19 MB, free: 4.352 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009838/0.0009838, allocations: 173 kB / 23.49 MB, free: 1.047 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9332/0.9332, allocations: 177.2 MB / 203.8 MB, free: 5.613 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.58/1.58, allocations: 273.5 MB / 0.5213 GB, free: 14.92 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.465e-06/2.465e-06, allocations: 0 / 0.6462 GB, free: 39.13 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.496e-05/2.742e-05, allocations: 2.312 kB / 0.6462 GB, free: 39.12 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005241/0.005269, allocations: 6.868 MB / 0.6529 GB, free: 34.61 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002085/0.007354, allocations: 1.288 MB / 0.6542 GB, free: 33.72 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003051/0.007659, allocations: 7.688 kB / 0.6542 GB, free: 33.72 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0002157/0.007875, allocations: 112.8 kB / 0.6543 GB, free: 33.65 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004335/0.008308, allocations: 342.9 kB / 0.6546 GB, free: 33.4 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004626/0.008771, allocations: 280.8 kB / 0.6549 GB, free: 33.21 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0007847/0.009556, allocations: 1.219 MB / 0.6561 GB, free: 32.52 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002424/0.009798, allocations: 188 kB / 0.6562 GB, free: 32.4 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005797/0.01038, allocations: 0.6181 MB / 0.6568 GB, free: 32.12 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004235/0.0108, allocations: 366.7 kB / 0.6572 GB, free: 31.98 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001897/0.01099, allocations: 110 kB / 0.6573 GB, free: 31.98 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002117/0.0112, allocations: 115.9 kB / 0.6574 GB, free: 31.98 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001039/0.01131, allocations: 194 kB / 0.6576 GB, free: 31.84 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.00037/0.01168, allocations: 364.7 kB / 0.6579 GB, free: 31.67 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0005668/0.01224, allocations: 0.7128 MB / 0.6586 GB, free: 31.29 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.224e-06/0.01225, allocations: 1.469 kB / 0.6586 GB, free: 31.29 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.222e-06/0.01225, allocations: 0 / 0.6586 GB, free: 31.29 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.444e-05/0.01226, allocations: 5.188 kB / 0.6586 GB, free: 31.28 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001321/0.01358, allocations: 1.409 MB / 0.66 GB, free: 30.17 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.3e-05/0.01361, allocations: 8.469 kB / 0.66 GB, free: 30.17 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001747/0.01379, allocations: 141.4 kB / 0.6602 GB, free: 30.11 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004644/0.01425, allocations: 450.3 kB / 0.6606 GB, free: 29.77 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.947e-05/0.01428, allocations: 43.97 kB / 0.6606 GB, free: 29.75 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.313e-05/0.01437, allocations: 73.19 kB / 0.6607 GB, free: 29.73 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007001/0.01507, allocations: 0.6908 MB / 0.6614 GB, free: 29.3 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.135e-05/0.0151, allocations: 8.109 kB / 0.6614 GB, free: 29.29 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.846e-05/0.01514, allocations: 28.47 kB / 0.6614 GB, free: 29.27 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.51e-05/0.01515, allocations: 17.94 kB / 0.6614 GB, free: 29.27 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004731/0.01562, allocations: 477.8 kB / 0.6619 GB, free: 29.03 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001501/0.01713, allocations: 1.925 MB / 0.6638 GB, free: 27.6 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0006535/0.01778, allocations: 0.5761 MB / 0.6643 GB, free: 27.23 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002615/0.01804, allocations: 345.5 kB / 0.6647 GB, free: 26.98 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 3.727e-05/0.01808, allocations: 14 kB / 0.6647 GB, free: 26.98 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005724/0.01865, allocations: 0.9575 MB / 0.6656 GB, free: 26.23 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.074e-06/0.01865, allocations: 0 / 0.6656 GB, free: 26.23 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002556/0.02121, allocations: 2.961 MB / 0.6685 GB, free: 24.17 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001034/0.02131, allocations: 0.6047 MB / 0.6691 GB, free: 23.46 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003896/0.0217, allocations: 0.522 MB / 0.6696 GB, free: 23.19 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.174e-05/0.02175, allocations: 58.42 kB / 0.6697 GB, free: 23.14 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001296/0.02188, allocations: 347.2 kB / 0.67 GB, free: 22.85 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.000159/0.02204, allocations: 356.3 kB / 0.6703 GB, free: 22.57 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001883/0.02223, allocations: 190.2 kB / 0.6705 GB, free: 22.48 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001099/0.02234, allocations: 0.5624 MB / 0.6711 GB, free: 21.95 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003451/0.02269, allocations: 461 kB / 0.6715 GB, free: 21.6 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000444/0.02313, allocations: 0.864 MB / 0.6723 GB, free: 20.7 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001004/0.02413, allocations: 1.557 MB / 0.6739 GB, free: 19.27 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.717e-06/0.02414, allocations: 1.594 kB / 0.6739 GB, free: 19.27 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.001153/0.02529, allocations: 1.375 MB / 0.6752 GB, free: 18.39 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 5.977e-05/0.02535, allocations: 265.8 kB / 0.6755 GB, free: 18.1 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.07e-05/0.02537, allocations: 6.562 kB / 0.6755 GB, free: 18.1 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.213e-05/0.02539, allocations: 14.81 kB / 0.6755 GB, free: 18.1 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00049/0.02588, allocations: 262.4 kB / 0.6757 GB, free: 18.07 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.541e-05/0.02589, allocations: 15.38 kB / 0.6757 GB, free: 18.07 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003118/0.0262, allocations: 54.33 kB / 0.6758 GB, free: 18.05 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.247e-05/0.02626, allocations: 51.62 kB / 0.6758 GB, free: 18.04 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.000368/0.02662, allocations: 0.5626 MB / 0.6764 GB, free: 17.57 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001153/0.02674, allocations: 135 kB / 0.6765 GB, free: 17.51 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.498e-05/0.02682, allocations: 79.72 kB / 0.6766 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.861e-06/0.02682, allocations: 9.906 kB / 0.6766 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.302e-05/0.02683, allocations: 1.375 kB / 0.6766 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.334e-06/0.02684, allocations: 3.188 kB / 0.6766 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001739/0.02858, allocations: 2.143 MB / 0.6787 GB, free: 16.07 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.965e-06/0.02858, allocations: 1.375 kB / 0.6787 GB, free: 16.07 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004486/0.02903, allocations: 167.7 kB / 0.6789 GB, free: 16.05 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.572e-06/0.02904, allocations: 4.281 kB / 0.6789 GB, free: 16.05 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.571e-05/0.02909, allocations: 36.92 kB / 0.6789 GB, free: 16.04 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.526e-06/0.0291, allocations: 2.844 kB / 0.6789 GB, free: 16.04 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.514e-06/0.0291, allocations: 6.328 kB / 0.6789 GB, free: 16.03 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001614/0.03071, allocations: 1.935 MB / 0.6808 GB, free: 14.75 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002473/0.03096, allocations: 166.2 kB / 0.681 GB, free: 14.65 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001066/0.03107, allocations: 49.14 kB / 0.681 GB, free: 14.62 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002805/0.03135, allocations: 42.42 kB / 0.6811 GB, free: 14.61 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001513/0.0315, allocations: 91.16 kB / 0.6811 GB, free: 14.59 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.8e-05/0.03155, allocations: 37.25 kB / 0.6812 GB, free: 14.58 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002822/0.03183, allocations: 346.1 kB / 0.6815 GB, free: 14.41 MB / 0.5262 GB Notification: Performance of sort global known variables: time 2.6e-07/0.03183, allocations: 0 / 0.6815 GB, free: 14.41 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0005261/0.03236, allocations: 250.1 kB / 0.6817 GB, free: 14.38 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001492/0.03251, allocations: 193.1 kB / 0.6819 GB, free: 14.25 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001013/0.03352, allocations: 1.501 MB / 0.6834 GB, free: 13.07 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.294e-06/0.03352, allocations: 0 / 0.6834 GB, free: 13.07 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0005059/0.03403, allocations: 0.8241 MB / 0.6842 GB, free: 12.4 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008778/0.03491, allocations: 282 kB / 0.6845 GB, free: 12.32 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003463/0.03837, allocations: 2.324 MB / 0.6867 GB, free: 10.81 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003639/0.03873, allocations: 362 kB / 0.6871 GB, free: 10.7 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002379/0.03897, allocations: 76.91 kB / 0.6872 GB, free: 10.68 MB / 0.5262 GB Notification: Performance of SimCode: time 1.362e-06/0.03897, allocations: 0 / 0.6872 GB, free: 10.68 MB / 0.5262 GB Notification: Performance of Templates: time 0.01475/0.05372, allocations: 12.39 MB / 0.6993 GB, free: 2.609 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.412658447865397]