Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001094/0.001094, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001194/0.001194, allocations: 173.3 kB / 23.49 MB, free: 1.062 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9511/0.9511, allocations: 177.1 MB / 203.8 MB, free: 5.648 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.584/1.584, allocations: 273.5 MB / 0.5213 GB, free: 14.86 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.955e-06/2.955e-06, allocations: 0 / 0.6462 GB, free: 39.22 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.067e-05/3.362e-05, allocations: 6 kB / 0.6462 GB, free: 39.22 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.009621/0.009654, allocations: 11.12 MB / 0.657 GB, free: 31.92 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003911/0.01356, allocations: 2.264 MB / 0.6593 GB, free: 30.3 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0009096/0.01447, allocations: 18 kB / 0.6593 GB, free: 30.3 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003936/0.01487, allocations: 227.8 kB / 0.6595 GB, free: 30.16 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001057/0.01593, allocations: 0.6914 MB / 0.6602 GB, free: 29.64 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.000862/0.01679, allocations: 0.6303 MB / 0.6608 GB, free: 29.19 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002036/0.01882, allocations: 2.679 MB / 0.6634 GB, free: 27.62 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005398/0.01936, allocations: 359.1 kB / 0.6637 GB, free: 27.38 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00158/0.02094, allocations: 1.362 MB / 0.6651 GB, free: 26.69 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001013/0.02196, allocations: 0.7402 MB / 0.6658 GB, free: 26.4 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003593/0.02231, allocations: 278.6 kB / 0.6661 GB, free: 26.4 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003207/0.02264, allocations: 282.1 kB / 0.6663 GB, free: 26.4 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001843/0.02282, allocations: 451.4 kB / 0.6668 GB, free: 26.06 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0007095/0.02353, allocations: 0.7645 MB / 0.6675 GB, free: 25.67 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.00119/0.02472, allocations: 1.583 MB / 0.6691 GB, free: 24.73 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.518e-06/0.02472, allocations: 0.7812 kB / 0.6691 GB, free: 24.73 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.793e-06/0.02473, allocations: 0 / 0.6691 GB, free: 24.73 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.063e-05/0.02475, allocations: 1.531 kB / 0.6691 GB, free: 24.73 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002154/0.0269, allocations: 2.557 MB / 0.6716 GB, free: 22.81 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.481e-05/0.02694, allocations: 9.875 kB / 0.6716 GB, free: 22.81 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000294/0.02724, allocations: 283.9 kB / 0.6718 GB, free: 22.68 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008055/0.02804, allocations: 0.8355 MB / 0.6727 GB, free: 22.06 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.934e-05/0.02809, allocations: 90.33 kB / 0.6727 GB, free: 22.02 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.00015/0.02824, allocations: 148.6 kB / 0.6729 GB, free: 21.97 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001433/0.02968, allocations: 1.347 MB / 0.6742 GB, free: 21.14 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.506e-05/0.02972, allocations: 17.42 kB / 0.6742 GB, free: 21.13 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.37e-05/0.02979, allocations: 51.59 kB / 0.6743 GB, free: 21.09 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.127e-05/0.02982, allocations: 29.47 kB / 0.6743 GB, free: 21.09 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009836/0.0308, allocations: 0.9368 MB / 0.6752 GB, free: 20.61 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003263/0.03406, allocations: 4.173 MB / 0.6793 GB, free: 17.56 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001256/0.03532, allocations: 1.148 MB / 0.6804 GB, free: 16.82 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0005523/0.03587, allocations: 0.6692 MB / 0.6811 GB, free: 16.3 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.143e-05/0.03593, allocations: 33.2 kB / 0.6811 GB, free: 16.3 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00128/0.03721, allocations: 1.916 MB / 0.683 GB, free: 14.84 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.789e-06/0.03722, allocations: 0 / 0.683 GB, free: 14.84 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.005558/0.04277, allocations: 6.462 MB / 0.6893 GB, free: 10.29 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001822/0.04296, allocations: 1.17 MB / 0.6904 GB, free: 8.918 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009575/0.04391, allocations: 0.8936 MB / 0.6913 GB, free: 8.531 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001125/0.04403, allocations: 101 kB / 0.6914 GB, free: 8.457 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002978/0.04432, allocations: 0.5753 MB / 0.6919 GB, free: 7.984 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003735/0.0447, allocations: 0.6891 MB / 0.6926 GB, free: 7.43 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004427/0.04514, allocations: 370.8 kB / 0.693 GB, free: 7.262 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.565e-05/0.04518, allocations: 481.2 kB / 0.6934 GB, free: 6.789 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0008276/0.046, allocations: 0.8908 MB / 0.6943 GB, free: 6.105 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009818/0.04699, allocations: 1.726 MB / 0.696 GB, free: 4.215 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00213/0.04912, allocations: 3.096 MB / 0.699 GB, free: 1.27 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.556e-05/0.04913, allocations: 5.812 kB / 0.699 GB, free: 1.27 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.002546/0.05168, allocations: 2.731 MB / 0.7017 GB, free: 14.62 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001871/0.05186, allocations: 0.5103 MB / 0.7022 GB, free: 14 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.922e-05/0.05188, allocations: 16 kB / 0.7022 GB, free: 13.99 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.469e-05/0.05192, allocations: 28 kB / 0.7022 GB, free: 13.96 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001008/0.05293, allocations: 0.5027 MB / 0.7027 GB, free: 13.46 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.843e-05/0.05295, allocations: 39.86 kB / 0.7027 GB, free: 13.42 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008175/0.05377, allocations: 112 kB / 0.7029 GB, free: 13.31 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001084/0.05388, allocations: 96 kB / 0.7029 GB, free: 13.22 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0009084/0.05479, allocations: 1.007 MB / 0.7039 GB, free: 12.18 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002682/0.05506, allocations: 259 kB / 0.7042 GB, free: 11.93 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001634/0.05522, allocations: 161.6 kB / 0.7043 GB, free: 11.77 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.187e-05/0.05523, allocations: 16 kB / 0.7043 GB, free: 11.75 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.126e-05/0.05526, allocations: 7.984 kB / 0.7044 GB, free: 11.75 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.224e-05/0.05528, allocations: 11.97 kB / 0.7044 GB, free: 11.73 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00408/0.05936, allocations: 4.43 MB / 0.7087 GB, free: 7.109 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.792e-06/0.05936, allocations: 7.938 kB / 0.7087 GB, free: 7.102 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008888/0.06025, allocations: 323.5 kB / 0.709 GB, free: 6.785 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.049e-05/0.06026, allocations: 8 kB / 0.709 GB, free: 6.777 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001065/0.06037, allocations: 79.91 kB / 0.7091 GB, free: 6.699 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.384e-06/0.06038, allocations: 11.98 kB / 0.7091 GB, free: 6.688 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.284e-06/0.06038, allocations: 4 kB / 0.7091 GB, free: 6.684 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003053/0.06343, allocations: 3.836 MB / 0.7128 GB, free: 2.609 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005729/0.064, allocations: 386.7 kB / 0.7132 GB, free: 2.23 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002267/0.06423, allocations: 104 kB / 0.7133 GB, free: 2.129 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005515/0.06478, allocations: 83.95 kB / 0.7134 GB, free: 2.047 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002635/0.06505, allocations: 187.6 kB / 0.7136 GB, free: 1.863 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.102e-05/0.06513, allocations: 75.95 kB / 0.7136 GB, free: 1.789 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005252/0.06565, allocations: 0.5607 MB / 0.7142 GB, free: 1.219 MB / 0.5418 GB Notification: Performance of sort global known variables: time 6e-08/0.06565, allocations: 0 / 0.7142 GB, free: 1.219 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001234/0.06689, allocations: 492 kB / 0.7147 GB, free: 0.7383 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002732/0.06716, allocations: 314.3 kB / 0.715 GB, free: 436 kB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.002388/0.06955, allocations: 3.015 MB / 0.7179 GB, free: 13 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 3.146e-06/0.06955, allocations: 1.875 kB / 0.7179 GB, free: 13 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001136/0.07069, allocations: 1.632 MB / 0.7195 GB, free: 11.15 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001678/0.07236, allocations: 0.5685 MB / 0.7201 GB, free: 10.63 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005488/0.07785, allocations: 4.534 MB / 0.7245 GB, free: 6.094 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0007363/0.07859, allocations: 0.6628 MB / 0.7251 GB, free: 5.395 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003668/0.07895, allocations: 140.5 kB / 0.7253 GB, free: 5.258 MB / 0.5574 GB Notification: Performance of SimCode: time 1.413e-06/0.07896, allocations: 0 / 0.7253 GB, free: 5.258 MB / 0.5574 GB Notification: Performance of Templates: time 0.02571/0.1047, allocations: 26.62 MB / 0.7513 GB, free: 11.43 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.486001833807677]