Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009765/0.0009765, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009928/0.0009928, allocations: 173 kB / 23.5 MB, free: 1.055 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9141/0.9141, allocations: 177.1 MB / 203.8 MB, free: 5.637 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.567/1.567, allocations: 273.5 MB / 0.5213 GB, free: 14.86 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.613e-06/1.613e-06, allocations: 0 / 0.6464 GB, free: 38.99 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.765e-05/1.927e-05, allocations: 5.75 kB / 0.6464 GB, free: 38.99 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00564/0.005659, allocations: 5.719 MB / 0.652 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.002283/0.007942, allocations: 1.304 MB / 0.6533 GB, free: 34.38 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003434/0.008286, allocations: 10.44 kB / 0.6533 GB, free: 34.38 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002855/0.008571, allocations: 128.4 kB / 0.6534 GB, free: 34.3 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0006342/0.009205, allocations: 363.5 kB / 0.6537 GB, free: 34.04 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0005029/0.009708, allocations: 262.1 kB / 0.654 GB, free: 33.87 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001073/0.01078, allocations: 1.277 MB / 0.6552 GB, free: 33.16 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003625/0.01114, allocations: 215.7 kB / 0.6554 GB, free: 33.03 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0007892/0.01193, allocations: 0.6539 MB / 0.6561 GB, free: 32.74 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0005923/0.01253, allocations: 389.9 kB / 0.6565 GB, free: 32.61 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001942/0.01272, allocations: 107.2 kB / 0.6566 GB, free: 32.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0002505/0.01297, allocations: 110.1 kB / 0.6567 GB, free: 32.61 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0001472/0.01312, allocations: 212 kB / 0.6569 GB, free: 32.46 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0005234/0.01364, allocations: 387.1 kB / 0.6572 GB, free: 32.29 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0007652/0.01441, allocations: 0.7328 MB / 0.658 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.705e-06/0.01441, allocations: 0 / 0.658 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.343e-06/0.01441, allocations: 1.375 kB / 0.658 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.589e-05/0.01443, allocations: 1.188 kB / 0.658 GB, free: 31.91 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 165
 * Number of variables: 165
Notification: Performance of Generate backend data structure: time 0.001797/0.01622, allocations: 1.474 MB / 0.6594 GB, free: 30.77 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.883e-05/0.01626, allocations: 17.09 kB / 0.6594 GB, free: 30.77 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000246/0.01651, allocations: 157.2 kB / 0.6596 GB, free: 30.7 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005991/0.01711, allocations: 446.5 kB / 0.66 GB, free: 30.36 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.304e-05/0.01715, allocations: 54.97 kB / 0.66 GB, free: 30.34 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001238/0.01727, allocations: 77.58 kB / 0.6601 GB, free: 30.31 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001119/0.01839, allocations: 0.7185 MB / 0.6608 GB, free: 29.9 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 4.071e-05/0.01843, allocations: 14.67 kB / 0.6608 GB, free: 29.89 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.834e-05/0.01849, allocations: 26.62 kB / 0.6609 GB, free: 29.88 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.994e-05/0.01851, allocations: 18.98 kB / 0.6609 GB, free: 29.88 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007823/0.01929, allocations: 0.4923 MB / 0.6614 GB, free: 29.63 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002713/0.02201, allocations: 1.958 MB / 0.6633 GB, free: 28.33 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0007132/0.02272, allocations: 0.4978 MB / 0.6637 GB, free: 28.04 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003914/0.02311, allocations: 338.3 kB / 0.6641 GB, free: 27.8 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.484e-05/0.02315, allocations: 13.41 kB / 0.6641 GB, free: 27.8 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0007521/0.0239, allocations: 0.8872 MB / 0.665 GB, free: 27.11 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 3.577e-06/0.0239, allocations: 3.938 kB / 0.665 GB, free: 27.1 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.003619/0.02752, allocations: 2.638 MB / 0.6675 GB, free: 25.43 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001196/0.02764, allocations: 0.5413 MB / 0.6681 GB, free: 24.79 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005624/0.0282, allocations: 0.5123 MB / 0.6686 GB, free: 24.52 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.061e-05/0.02827, allocations: 63.3 kB / 0.6686 GB, free: 24.47 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.000199/0.02847, allocations: 379 kB / 0.669 GB, free: 24.16 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0002237/0.0287, allocations: 347 kB / 0.6693 GB, free: 23.88 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002688/0.02897, allocations: 187.4 kB / 0.6695 GB, free: 23.79 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001585/0.02912, allocations: 0.5698 MB / 0.67 GB, free: 23.26 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005558/0.02968, allocations: 454.6 kB / 0.6705 GB, free: 22.92 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006073/0.03029, allocations: 0.8321 MB / 0.6713 GB, free: 22.07 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001489/0.03178, allocations: 1.529 MB / 0.6728 GB, free: 20.69 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.013e-05/0.03179, allocations: 4.156 kB / 0.6728 GB, free: 20.69 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=157) (initialization): time 0.001681/0.03347, allocations: 1.367 MB / 0.6741 GB, free: 19.81 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 7.543e-05/0.03354, allocations: 261.2 kB / 0.6744 GB, free: 19.52 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.466e-05/0.03356, allocations: 12.38 kB / 0.6744 GB, free: 19.52 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.661e-05/0.03358, allocations: 15.06 kB / 0.6744 GB, free: 19.52 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008502/0.03443, allocations: 250.8 kB / 0.6746 GB, free: 19.49 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.17e-05/0.03446, allocations: 16.62 kB / 0.6747 GB, free: 19.48 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004922/0.03495, allocations: 56.77 kB / 0.6747 GB, free: 19.46 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.44e-05/0.03503, allocations: 52.58 kB / 0.6748 GB, free: 19.45 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_441524.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 32
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (148):
 * Single equations (assignments): 139
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0005027/0.03554, allocations: 0.5441 MB / 0.6753 GB, free: 18.99 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001643/0.0357, allocations: 123.6 kB / 0.6754 GB, free: 18.94 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001154/0.03582, allocations: 88.17 kB / 0.6755 GB, free: 18.88 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.246e-06/0.03582, allocations: 8.469 kB / 0.6755 GB, free: 18.88 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.165e-05/0.03584, allocations: 0 / 0.6755 GB, free: 18.88 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.029e-05/0.03585, allocations: 8.656 kB / 0.6755 GB, free: 18.88 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002602/0.03845, allocations: 1.88 MB / 0.6773 GB, free: 17.76 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.499e-06/0.03845, allocations: 0.7969 kB / 0.6773 GB, free: 17.76 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007365/0.03919, allocations: 167.8 kB / 0.6775 GB, free: 17.74 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.329e-05/0.0392, allocations: 6.719 kB / 0.6775 GB, free: 17.73 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.642e-05/0.03929, allocations: 35.56 kB / 0.6775 GB, free: 17.72 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.801e-06/0.03929, allocations: 2.938 kB / 0.6775 GB, free: 17.72 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.924e-06/0.0393, allocations: 3.984 kB / 0.6776 GB, free: 17.71 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002219/0.04151, allocations: 1.713 MB / 0.6792 GB, free: 16.66 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.000108/0.04162, allocations: 74.91 kB / 0.6793 GB, free: 16.61 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001544/0.04178, allocations: 39.81 kB / 0.6793 GB, free: 16.59 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003971/0.04217, allocations: 46.52 kB / 0.6794 GB, free: 16.58 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002019/0.04238, allocations: 86.38 kB / 0.6795 GB, free: 16.56 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.005e-05/0.04244, allocations: 36.72 kB / 0.6795 GB, free: 16.55 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0003756/0.04281, allocations: 340.7 kB / 0.6798 GB, free: 16.38 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 1.1e-07/0.04281, allocations: 0 / 0.6798 GB, free: 16.38 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0007809/0.04359, allocations: 256.1 kB / 0.6801 GB, free: 16.36 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC)
 * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising)
 * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001948/0.04379, allocations: 186.6 kB / 0.6802 GB, free: 16.23 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.001424/0.04521, allocations: 1.498 MB / 0.6817 GB, free: 15.05 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.873e-06/0.04521, allocations: 0 / 0.6817 GB, free: 15.05 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0006532/0.04587, allocations: 0.8243 MB / 0.6825 GB, free: 14.39 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001092/0.04696, allocations: 264.7 kB / 0.6828 GB, free: 14.32 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004849/0.05181, allocations: 2.381 MB / 0.6851 GB, free: 12.82 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004215/0.05223, allocations: 377 kB / 0.6855 GB, free: 12.7 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000263/0.05249, allocations: 69.66 kB / 0.6855 GB, free: 12.69 MB / 0.5262 GB
Notification: Performance of SimCode: time 8.22e-07/0.05249, allocations: 1.062 kB / 0.6855 GB, free: 12.69 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01206/0.06456, allocations: 12.26 MB / 0.6975 GB, free: 4.562 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 7.181592687964439]