Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009307/0.0009307, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009702/0.0009702, allocations: 173.3 kB / 23.5 MB, free: 1.059 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.97/0.97, allocations: 177.1 MB / 203.8 MB, free: 5.633 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.594/1.594, allocations: 273.5 MB / 0.5213 GB, free: 14.86 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.014e-06/2.014e-06, allocations: 0 / 0.6462 GB, free: 39.24 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.218e-05/2.42e-05, allocations: 3.562 kB / 0.6462 GB, free: 39.24 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001498/0.001522, allocations: 1.294 MB / 0.6475 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001729/0.001695, allocations: 53.22 kB / 0.6475 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.551e-05/0.001731, allocations: 1.422 kB / 0.6475 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 7.411e-05/0.001805, allocations: 5.5 kB / 0.6475 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 3.428e-05/0.001839, allocations: 1.312 kB / 0.6475 GB, free: 38.35 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000146/0.001985, allocations: 18.56 kB / 0.6475 GB, free: 38.34 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001489/0.002134, allocations: 152.4 kB / 0.6477 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.709e-05/0.002171, allocations: 1.469 kB / 0.6477 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001081/0.002279, allocations: 76.84 kB / 0.6478 GB, free: 38.28 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001258/0.002405, allocations: 76.73 kB / 0.6478 GB, free: 38.27 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.78e-05/0.002433, allocations: 7.25 kB / 0.6478 GB, free: 38.27 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.646e-05/0.002449, allocations: 11.78 kB / 0.6478 GB, free: 38.27 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.476e-05/0.002484, allocations: 37.44 kB / 0.6479 GB, free: 38.25 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 3.973e-05/0.002524, allocations: 27.28 kB / 0.6479 GB, free: 38.24 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001204/0.002644, allocations: 98.36 kB / 0.648 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.003e-06/0.002646, allocations: 0 / 0.648 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.262e-06/0.002647, allocations: 0 / 0.648 GB, free: 38.21 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.359e-06/0.002652, allocations: 0.9688 kB / 0.648 GB, free: 38.21 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0008917/0.003543, allocations: 0.5954 MB / 0.6486 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.566e-05/0.003579, allocations: 10.5 kB / 0.6486 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.362e-05/0.003633, allocations: 6.406 kB / 0.6486 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001127/0.003745, allocations: 140.2 kB / 0.6487 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.418e-06/0.003755, allocations: 6.062 kB / 0.6487 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.515e-05/0.00377, allocations: 3.25 kB / 0.6487 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002762/0.004046, allocations: 159.4 kB / 0.6489 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 6.552e-06/0.004053, allocations: 4.875 kB / 0.6489 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.242e-05/0.004065, allocations: 384 / 0.6489 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.723e-06/0.004072, allocations: 384 / 0.6489 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 9.717e-05/0.004169, allocations: 35.22 kB / 0.6489 GB, free: 37.59 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002222/0.004391, allocations: 275.3 kB / 0.6492 GB, free: 37.3 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 8.282e-05/0.004474, allocations: 41.84 kB / 0.6492 GB, free: 37.26 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 7.697e-05/0.004551, allocations: 41.72 kB / 0.6493 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.432e-05/0.004565, allocations: 2.25 kB / 0.6493 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.649e-05/0.004582, allocations: 37.08 kB / 0.6493 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.222e-06/0.004583, allocations: 0 / 0.6493 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002764/0.004859, allocations: 111.6 kB / 0.6494 GB, free: 37.14 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.977e-05/0.004879, allocations: 52.88 kB / 0.6495 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.004e-05/0.004939, allocations: 173.7 kB / 0.6496 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.166e-05/0.004951, allocations: 30.8 kB / 0.6497 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.272e-05/0.004984, allocations: 133.2 kB / 0.6498 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.017e-05/0.005004, allocations: 34.64 kB / 0.6498 GB, free: 36.72 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.717e-05/0.005051, allocations: 43.62 kB / 0.6499 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.528e-05/0.005096, allocations: 498.5 kB / 0.6503 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.248e-05/0.005149, allocations: 11.94 kB / 0.6504 GB, free: 36.19 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.763e-05/0.005206, allocations: 40.23 kB / 0.6504 GB, free: 36.16 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001083/0.005315, allocations: 60.3 kB / 0.6505 GB, free: 36.12 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.036e-06/0.005318, allocations: 6.125 kB / 0.6505 GB, free: 36.12 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001662/0.005484, allocations: 91.3 kB / 0.6505 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.227e-05/0.005496, allocations: 4.156 kB / 0.6505 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.849e-06/0.005501, allocations: 6.719 kB / 0.6506 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.172e-05/0.005513, allocations: 0 / 0.6506 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002245/0.005737, allocations: 77.3 kB / 0.6506 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.232e-06/0.005743, allocations: 2.125 kB / 0.6506 GB, free: 36.07 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001454/0.005889, allocations: 61.42 kB / 0.6507 GB, free: 36.06 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.241e-05/0.005901, allocations: 7.516 kB / 0.6507 GB, free: 36.06 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 4.951e-05/0.005951, allocations: 158.3 kB / 0.6508 GB, free: 35.89 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.313e-05/0.005974, allocations: 17.77 kB / 0.6509 GB, free: 35.88 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002507/0.006225, allocations: 171.8 kB / 0.651 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.715e-06/0.006227, allocations: 5.625 kB / 0.651 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.286e-06/0.006231, allocations: 0 / 0.651 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.286e-06/0.006234, allocations: 3.938 kB / 0.651 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 9e-05/0.006324, allocations: 154.8 kB / 0.6512 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.924e-06/0.006326, allocations: 3.625 kB / 0.6512 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002105/0.006536, allocations: 93.62 kB / 0.6513 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.685e-06/0.006539, allocations: 1.844 kB / 0.6513 GB, free: 35.63 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.268e-05/0.006552, allocations: 4 kB / 0.6513 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.793e-06/0.006553, allocations: 1.688 kB / 0.6513 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.503e-06/0.006555, allocations: 7.625 kB / 0.6513 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001909/0.006746, allocations: 168.5 kB / 0.6515 GB, free: 35.51 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.113e-05/0.006757, allocations: 15.61 kB / 0.6515 GB, free: 35.5 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.773e-05/0.006775, allocations: 5.625 kB / 0.6515 GB, free: 35.5 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001414/0.006916, allocations: 56.97 kB / 0.6515 GB, free: 35.5 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.153e-05/0.006978, allocations: 33.05 kB / 0.6516 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.026e-05/0.006988, allocations: 4.406 kB / 0.6516 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.355e-05/0.007011, allocations: 133.4 kB / 0.6517 GB, free: 35.36 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 6e-08/0.007012, allocations: 2.781 kB / 0.6517 GB, free: 35.36 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001509/0.007162, allocations: 34.94 kB / 0.6517 GB, free: 35.35 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.691e-05/0.007229, allocations: 100.3 kB / 0.6518 GB, free: 35.26 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001744/0.007404, allocations: 71.28 kB / 0.6519 GB, free: 35.24 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.543e-06/0.007405, allocations: 0 / 0.6519 GB, free: 35.24 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 8.8e-05/0.007493, allocations: 69.81 kB / 0.652 GB, free: 35.21 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001545/0.007648, allocations: 14.12 kB / 0.652 GB, free: 35.21 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005566/0.008204, allocations: 275.7 kB / 0.6522 GB, free: 35.01 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.584e-05/0.00825, allocations: 83.83 kB / 0.6523 GB, free: 34.94 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 9.637e-05/0.008347, allocations: 26.97 kB / 0.6523 GB, free: 34.93 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.052e-06/0.008348, allocations: 3.938 kB / 0.6523 GB, free: 34.92 MB / 0.5262 GB
Notification: Performance of Templates: time 0.002447/0.0108, allocations: 1.907 MB / 0.6542 GB, free: 34.83 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 6.302296832902357]