Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009275/0.0009275, allocations: 73.97 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001/0.001, allocations: 169.4 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9733/0.9733, allocations: 177.1 MB / 204.5 MB, free: 5.512 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.06472/0.06472, allocations: 12.76 MB / 273.8 MB, free: 132 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.092e-06/1.092e-06, allocations: 0 / 347.1 MB, free: 1.746 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.958e-05/2.067e-05, allocations: 4.703 kB / 347.1 MB, free: 1.742 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC): time 0.006843/0.006863, allocations: 10.41 MB / 357.6 MB, free: 7.293 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02643/0.03329, allocations: 11.05 MB / 368.6 MB, free: 12.2 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.005101/0.03839, allocations: 98.94 kB / 368.7 MB, free: 12.1 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001216/0.03961, allocations: 404 kB / 369.1 MB, free: 11.7 MB / 298.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.01241/0.05201, allocations: 2.202 MB / 371.3 MB, free: 9.488 MB / 298.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.01102/0.06303, allocations: 2.002 MB / 373.3 MB, free: 7.48 MB / 298.7 MB
Notification: Performance of NFFlatten.flatten: time 0.006927/0.06996, allocations: 2.872 MB / 376.2 MB, free: 4.594 MB / 298.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.003347/0.0733, allocations: 388 kB / 376.6 MB, free: 4.188 MB / 298.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001969/0.07527, allocations: 1.368 MB / 377.9 MB, free: 2.816 MB / 298.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001282/0.07655, allocations: 1.247 MB / 379.2 MB, free: 1.566 MB / 298.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002609/0.07682, allocations: 144 kB / 379.3 MB, free: 1.426 MB / 298.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003432/0.07716, allocations: 156 kB / 379.5 MB, free: 1.273 MB / 298.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003556/0.07751, allocations: 0.5448 MB / 380 MB, free: 0.7227 MB / 298.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006219/0.07814, allocations: 0.7128 MB / 380.7 MB, free: 8 kB / 298.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.00147/0.07961, allocations: 1.879 MB / 382.6 MB, free: 14.12 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.382e-06/0.07961, allocations: 4 kB / 382.6 MB, free: 14.12 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.122e-06/0.07961, allocations: 0 / 382.6 MB, free: 14.12 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 2.888e-05/0.07964, allocations: 0 / 382.6 MB, free: 14.12 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 287
 * Number of variables: 287
Notification: Performance of Generate backend data structure: time 0.002634/0.08228, allocations: 2.605 MB / 385.2 MB, free: 11.46 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.613e-05/0.08231, allocations: 15.98 kB / 385.2 MB, free: 11.45 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006815/0.08299, allocations: 423.3 kB / 385.6 MB, free: 11.03 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001408/0.0844, allocations: 1.304 MB / 386.9 MB, free: 9.684 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.051e-05/0.08445, allocations: 90.64 kB / 387 MB, free: 9.594 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001143/0.08457, allocations: 116.3 kB / 387.1 MB, free: 9.48 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008608/0.08543, allocations: 0.7967 MB / 387.9 MB, free: 8.637 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.952e-05/0.08545, allocations: 3.938 kB / 387.9 MB, free: 8.633 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.27e-05/0.08551, allocations: 44 kB / 388 MB, free: 8.59 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.856e-05/0.08553, allocations: 28 kB / 388 MB, free: 8.562 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000511/0.08604, allocations: 379.3 kB / 388.4 MB, free: 8.18 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004065/0.0901, allocations: 3.168 MB / 391.6 MB, free: 4.945 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004561/0.09056, allocations: 422 kB / 392 MB, free: 4.508 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002294/0.09079, allocations: 217.2 kB / 392.2 MB, free: 4.285 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 4.074e-05/0.09083, allocations: 20.94 kB / 392.2 MB, free: 4.266 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.794e-05/0.09086, allocations: 50.33 kB / 392.2 MB, free: 4.207 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=98): time 2.976e-06/0.09086, allocations: 4 kB / 392.2 MB, free: 4.203 MB / 314.7 MB
Notification: Performance of matching and sorting (n=161): time 0.02043/0.1113, allocations: 6.972 MB / 399.2 MB, free: 13.21 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.026e-05/0.1113, allocations: 94.42 kB / 399.3 MB, free: 13.1 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00125/0.1126, allocations: 1.502 MB / 400.8 MB, free: 11.55 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0001259/0.1127, allocations: 57.7 kB / 400.9 MB, free: 11.48 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004887/0.1132, allocations: 0.97 MB / 401.8 MB, free: 10.5 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003593/0.1136, allocations: 0.5771 MB / 402.4 MB, free: 9.918 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003607/0.1139, allocations: 356.9 kB / 402.8 MB, free: 9.559 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001027/0.114, allocations: 488.6 kB / 403.2 MB, free: 9.078 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003743/0.1144, allocations: 243.8 kB / 403.5 MB, free: 8.84 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006038/0.115, allocations: 0.8078 MB / 404.3 MB, free: 7.812 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001133/0.1161, allocations: 1.227 MB / 405.5 MB, free: 6.367 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.045e-06/0.1161, allocations: 4 kB / 405.5 MB, free: 6.363 MB / 330.7 MB
Notification: Performance of matching and sorting (n=236) (initialization): time 0.007338/0.1235, allocations: 2.959 MB / 408.5 MB, free: 3.383 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.489e-05/0.1235, allocations: 15.98 kB / 408.5 MB, free: 3.367 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.998e-05/0.1235, allocations: 15.98 kB / 408.5 MB, free: 3.352 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.009952/0.1335, allocations: 2.944 MB / 411.5 MB, free: 404 kB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005451/0.134, allocations: 235.6 kB / 411.7 MB, free: 168 kB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1324/0.2664, allocations: 10.43 MB / 422.1 MB, free: 60.98 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00104/0.2674, allocations: 90.23 kB / 422.2 MB, free: 60.95 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.838e-05/0.2675, allocations: 57.92 kB / 422.3 MB, free: 60.94 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 52
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (120):
 * Single equations (assignments): 118
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(3,56,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of prepare postOptimizeDAE: time 0.0003861/0.2679, allocations: 256.3 kB / 422.5 MB, free: 60.72 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003325/0.2683, allocations: 269.5 kB / 422.8 MB, free: 60.58 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003268/0.2686, allocations: 328.5 kB / 423.1 MB, free: 60.33 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.666e-05/0.2686, allocations: 23.44 kB / 423.1 MB, free: 60.33 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.822e-05/0.2686, allocations: 8.094 kB / 423.1 MB, free: 60.33 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.03e-05/0.2686, allocations: 11 kB / 423.1 MB, free: 60.33 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001438/0.2701, allocations: 0.9647 MB / 424.1 MB, free: 60.01 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.206e-06/0.2701, allocations: 1.375 kB / 424.1 MB, free: 60.01 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002703/0.2704, allocations: 94.84 kB / 424.2 MB, free: 60.01 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.009166/0.2795, allocations: 2.78 MB / 427 MB, free: 59.85 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001348/0.2797, allocations: 23.78 kB / 427 MB, free: 59.83 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01207/0.2917, allocations: 10.37 MB / 437.4 MB, free: 52.8 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.034e-06/0.2917, allocations: 0 / 437.4 MB, free: 52.8 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00708/0.2988, allocations: 3.161 MB / 440.5 MB, free: 49.72 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0006685/0.2995, allocations: 392.2 kB / 440.9 MB, free: 49.34 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001737/0.2996, allocations: 24 kB / 440.9 MB, free: 49.32 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005838/0.3002, allocations: 39.98 kB / 441 MB, free: 49.28 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004214/0.3007, allocations: 154 kB / 441.1 MB, free: 49.13 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.577e-05/0.3007, allocations: 31.94 kB / 441.1 MB, free: 49.1 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0005265/0.3012, allocations: 0.834 MB / 442 MB, free: 48.32 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.7e-07/0.3012, allocations: 7.172 kB / 442 MB, free: 48.32 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001689/0.3029, allocations: 0.9141 MB / 442.9 MB, free: 47.41 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 1 (hemoglobinConservationLaw.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (45):
 * Single equations (assignments): 43
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(6,53,86.1%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001791/0.3031, allocations: 125.6 kB / 443 MB, free: 47.28 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.003316/0.3064, allocations: 2.275 MB / 445.3 MB, free: 45.05 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.504e-06/0.3064, allocations: 4.062 kB / 445.3 MB, free: 45.05 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.002806/0.3092, allocations: 1.844 MB / 447.2 MB, free: 43.2 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001143/0.3104, allocations: 341.9 kB / 447.5 MB, free: 42.88 MB / 330.7 MB
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit %: Parse error
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004293/0.3147, allocations: 3.403 MB / 450.9 MB, free: 39.5 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005907/0.3153, allocations: 0.9723 MB / 451.9 MB, free: 38.48 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000526/0.3158, allocations: 378 kB / 452.2 MB, free: 38.11 MB / 330.7 MB
Notification: Performance of SimCode: time 1.273e-06/0.3158, allocations: 4 kB / 452.2 MB, free: 38.11 MB / 330.7 MB
Notification: Performance of Templates: time 0.0312/0.347, allocations: 43.46 MB / 495.7 MB, free: 10.78 MB / 346.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.171305940952152]