Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001264/0.001264, allocations: 73.88 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001512/0.001512, allocations: 173 kB / 24.06 MB, free: 452 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9425/0.9425, allocations: 177.1 MB / 204.5 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.05178/0.05178, allocations: 12.76 MB / 273.8 MB, free: 132 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.723e-06/1.723e-06, allocations: 0 / 347.1 MB, free: 2.941 MB / 314.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.434e-05/1.606e-05, allocations: 2.312 kB / 347.1 MB, free: 2.938 MB / 314.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.006548/0.006564, allocations: 5.757 MB / 352.9 MB, free: 13.16 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.008301/0.01487, allocations: 5.663 MB / 358.6 MB, free: 7.473 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003776/0.01524, allocations: 47.5 kB / 358.6 MB, free: 7.426 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.000409/0.01565, allocations: 182.3 kB / 358.8 MB, free: 7.246 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.002205/0.01786, allocations: 1.029 MB / 359.8 MB, free: 6.211 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001969/0.01983, allocations: 1.015 MB / 360.8 MB, free: 5.195 MB / 330.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002999/0.02282, allocations: 3.251 MB / 364.1 MB, free: 1.93 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0008016/0.02363, allocations: 0.5624 MB / 364.6 MB, free: 1.34 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001625/0.02525, allocations: 1.641 MB / 366.3 MB, free: 15.7 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001812/0.02706, allocations: 1.524 MB / 367.8 MB, free: 14.17 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.00032/0.02738, allocations: 164 kB / 368 MB, free: 14.01 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0004379/0.02782, allocations: 184 kB / 368.1 MB, free: 13.83 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006177/0.02844, allocations: 0.6733 MB / 368.8 MB, free: 13.15 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0009234/0.02936, allocations: 0.8764 MB / 369.7 MB, free: 12.27 MB / 346.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.002442/0.0318, allocations: 2.542 MB / 372.2 MB, free: 9.723 MB / 346.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.318e-06/0.03181, allocations: 3.984 kB / 372.2 MB, free: 9.719 MB / 346.7 MB
Notification: Performance of FrontEnd: time 7.42e-07/0.03181, allocations: 0 / 372.2 MB, free: 9.719 MB / 346.7 MB
Notification: Performance of Transformations before backend: time 1.985e-05/0.03183, allocations: 0 / 372.2 MB, free: 9.719 MB / 346.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.004738/0.03657, allocations: 3.21 MB / 375.5 MB, free: 6.449 MB / 346.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.44e-05/0.0366, allocations: 11.98 kB / 375.5 MB, free: 6.438 MB / 346.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001026/0.03763, allocations: 479 kB / 375.9 MB, free: 5.969 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00247/0.0401, allocations: 1.533 MB / 377.5 MB, free: 4.367 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001082/0.04021, allocations: 119.4 kB / 377.6 MB, free: 4.25 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002354/0.04044, allocations: 172.3 kB / 377.8 MB, free: 4.082 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001825/0.04227, allocations: 1.16 MB / 378.9 MB, free: 2.855 MB / 346.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.479e-05/0.0423, allocations: 7.938 kB / 378.9 MB, free: 2.848 MB / 346.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001324/0.04243, allocations: 60 kB / 379 MB, free: 2.789 MB / 346.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.767e-05/0.04251, allocations: 58.98 kB / 379 MB, free: 2.73 MB / 346.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001139/0.04365, allocations: 496.3 kB / 379.5 MB, free: 2.238 MB / 346.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008664/0.05232, allocations: 5.461 MB / 385 MB, free: 12.62 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001092/0.05341, allocations: 0.7204 MB / 385.7 MB, free: 11.8 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0005197/0.05393, allocations: 303.3 kB / 386 MB, free: 11.47 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 6.866e-05/0.054, allocations: 24.94 kB / 386 MB, free: 11.44 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.496e-05/0.05404, allocations: 58.31 kB / 386.1 MB, free: 11.38 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=118): time 3.888e-06/0.05404, allocations: 4 kB / 386.1 MB, free: 11.37 MB / 362.7 MB
Notification: Performance of matching and sorting (n=183): time 0.01585/0.0699, allocations: 4.738 MB / 390.8 MB, free: 6.613 MB / 362.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.452e-05/0.06998, allocations: 257.3 kB / 391.1 MB, free: 6.309 MB / 362.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001392/0.07137, allocations: 2.092 MB / 393.2 MB, free: 4.184 MB / 362.7 MB
Notification: Performance of collectPreVariables (initialization): time 9.879e-05/0.07147, allocations: 61.7 kB / 393.2 MB, free: 4.117 MB / 362.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0006136/0.07209, allocations: 1.264 MB / 394.5 MB, free: 2.84 MB / 362.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003807/0.07247, allocations: 0.6896 MB / 395.2 MB, free: 2.145 MB / 362.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004809/0.07295, allocations: 486.1 kB / 395.7 MB, free: 1.66 MB / 362.7 MB
Notification: Performance of setup shared object (initialization): time 9.833e-05/0.07304, allocations: 480.8 kB / 396.1 MB, free: 1.188 MB / 362.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004446/0.07349, allocations: 288.3 kB / 396.4 MB, free: 0.9023 MB / 362.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008612/0.07435, allocations: 1.239 MB / 397.6 MB, free: 15.28 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001466/0.07582, allocations: 1.745 MB / 399.4 MB, free: 13.16 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.284e-06/0.07582, allocations: 4 kB / 399.4 MB, free: 13.16 MB / 378.7 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.006653/0.08248, allocations: 2.996 MB / 402.4 MB, free: 10.14 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.133e-05/0.0825, allocations: 12 kB / 402.4 MB, free: 10.13 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.826e-05/0.08252, allocations: 20 kB / 402.4 MB, free: 10.11 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.008166/0.09068, allocations: 2.71 MB / 405.1 MB, free: 7.387 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008024/0.09149, allocations: 419.4 kB / 405.5 MB, free: 6.977 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.01322/0.1047, allocations: 9.327 MB / 414.9 MB, free: 13.44 MB / 394.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001003/0.1057, allocations: 107.8 kB / 415 MB, free: 13.33 MB / 394.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001142/0.1058, allocations: 76 kB / 415 MB, free: 13.26 MB / 394.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (205):
 * Single equations (assignments): 203
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004487/0.1063, allocations: 288 kB / 415.3 MB, free: 12.96 MB / 394.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003703/0.1066, allocations: 318.3 kB / 415.6 MB, free: 12.65 MB / 394.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003767/0.107, allocations: 384.6 kB / 416 MB, free: 12.27 MB / 394.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.141e-05/0.107, allocations: 23.98 kB / 416 MB, free: 12.25 MB / 394.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.279e-05/0.107, allocations: 8 kB / 416 MB, free: 12.24 MB / 394.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.196e-05/0.1071, allocations: 11.97 kB / 416.1 MB, free: 12.23 MB / 394.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.009931/0.117, allocations: 5.753 MB / 421.8 MB, free: 6.141 MB / 394.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.231e-05/0.117, allocations: 16 kB / 421.8 MB, free: 6.125 MB / 394.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003865/0.1174, allocations: 211.7 kB / 422 MB, free: 5.918 MB / 394.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.009151/0.1265, allocations: 2.543 MB / 424.6 MB, free: 3.363 MB / 394.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002862/0.1268, allocations: 56 kB / 424.6 MB, free: 3.309 MB / 394.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01262/0.1395, allocations: 8.957 MB / 433.6 MB, free: 10.11 MB / 410.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.144e-05/0.1395, allocations: 27.88 kB / 433.6 MB, free: 10.09 MB / 410.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007077/0.1465, allocations: 4.463 MB / 438.1 MB, free: 5.32 MB / 410.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0006409/0.1472, allocations: 448 kB / 438.5 MB, free: 4.883 MB / 410.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001931/0.1474, allocations: 55.98 kB / 438.6 MB, free: 4.828 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007531/0.1481, allocations: 75.86 kB / 438.6 MB, free: 4.754 MB / 410.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003207/0.1484, allocations: 240.1 kB / 438.9 MB, free: 4.516 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.828e-05/0.1485, allocations: 52 kB / 438.9 MB, free: 4.465 MB / 410.7 MB
Notification: Performance of sorting global known variables: time 0.000757/0.1493, allocations: 1.044 MB / 440 MB, free: 3.406 MB / 410.7 MB
Notification: Performance of sort global known variables: time 3e-08/0.1493, allocations: 0 / 440 MB, free: 3.406 MB / 410.7 MB
Notification: Performance of remove unused functions: time 0.002126/0.1514, allocations: 1.004 MB / 441 MB, free: 2.402 MB / 410.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 72
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (111):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002096/0.1516, allocations: 166.9 kB / 441.1 MB, free: 2.227 MB / 410.7 MB
Notification: Performance of simCode: created initialization part: time 0.108/0.2596, allocations: 2.451 MB / 443.6 MB, free: 119.4 MB / 410.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.025e-05/0.2596, allocations: 0 / 443.6 MB, free: 119.4 MB / 410.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.00298/0.2626, allocations: 1.747 MB / 445.3 MB, free: 119 MB / 410.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001869/0.2644, allocations: 0.5183 MB / 445.9 MB, free: 119 MB / 410.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Error: Error parsing unit %: Parse error
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004717/0.2692, allocations: 5.116 MB / 451 MB, free: 116.5 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008248/0.27, allocations: 1.362 MB / 452.3 MB, free: 116.3 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006718/0.2707, allocations: 499.8 kB / 452.8 MB, free: 116.3 MB / 410.7 MB
Notification: Performance of SimCode: time 8.31e-07/0.2707, allocations: 0 / 452.8 MB, free: 116.3 MB / 410.7 MB
Notification: Performance of Templates: time 0.04295/0.3136, allocations: 62.76 MB / 0.5035 GB, free: 80.13 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.459253772161901]