Running: ./testmodel.py --libraries=/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ --ompython_omhome=/usr BioChem_BioChem.Examples.CellDivison.cell.conf.json
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
Using package ModelicaServices with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Using package Modelica with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package BioChem with version 1.1.2 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo)
Running command: translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo): time 0.06791/0.06791, allocations: 12.67 MB / 27.92 MB, free: 0.9102 MB / 18.57 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001052/0.001052, allocations: 177.3 kB / 31.47 MB, free: 3.609 MB / 24.77 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.507/1.507, allocations: 225.7 MB / 260.6 MB, free: 8.77 MB / 202.7 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0008155/0.0008159, allocations: 106.1 kB / 314.5 MB, free: 9.066 MB / 250.7 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.0003274/0.0003275, allocations: 8.219 kB / 378.2 MB, free: 52.96 MB / 298.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1061/0.1065, allocations: 53.1 MB / 431.3 MB, free: 9.156 MB / 298.7 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CellDivison.cell): time 0.005391/0.1119, allocations: 5.299 MB / 436.6 MB, free: 3.836 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0004767/0.1124, allocations: 466.6 kB / 437.1 MB, free: 3.375 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001389/0.1126, allocations: 24 kB / 437.1 MB, free: 3.352 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 8.745e-05/0.1127, allocations: 63.64 kB / 437.2 MB, free: 3.289 MB / 298.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0002023/0.1129, allocations: 99.17 kB / 437.3 MB, free: 3.191 MB / 298.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0002242/0.1131, allocations: 79.92 kB / 437.4 MB, free: 3.113 MB / 298.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0002694/0.1134, allocations: 438.7 kB / 437.8 MB, free: 2.68 MB / 298.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002946/0.1137, allocations: 210.3 kB / 438 MB, free: 2.469 MB / 298.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 9.42e-05/0.1138, allocations: 143.4 kB / 438.1 MB, free: 2.328 MB / 298.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001573/0.114, allocations: 195 kB / 438.3 MB, free: 2.137 MB / 298.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.25e-05/0.114, allocations: 24 kB / 438.3 MB, free: 2.113 MB / 298.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 4.963e-05/0.1141, allocations: 20 kB / 438.4 MB, free: 2.094 MB / 298.7 MB
Notification: Performance of NFScalarize.scalarize: time 5.342e-05/0.1141, allocations: 75.7 kB / 438.4 MB, free: 2.02 MB / 298.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001447/0.1143, allocations: 232.5 kB / 438.7 MB, free: 1.785 MB / 298.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0002934/0.1146, allocations: 494 kB / 439.1 MB, free: 1.301 MB / 298.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.358e-06/0.1146, allocations: 0 / 439.1 MB, free: 1.301 MB / 298.7 MB
Notification: Performance of FrontEnd: time 1.413e-06/0.1146, allocations: 0 / 439.1 MB, free: 1.301 MB / 298.7 MB
Notification: Performance of Transformations before backend: time 7.615e-06/0.1146, allocations: 0 / 439.1 MB, free: 1.301 MB / 298.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 148
 * Number of variables: 148
Notification: Performance of Generate backend data structure: time 0.0006938/0.1153, allocations: 0.6399 MB / 439.8 MB, free: 0.6094 MB / 298.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.667e-05/0.1154, allocations: 11.97 kB / 439.8 MB, free: 0.5977 MB / 298.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.826e-05/0.1154, allocations: 52.38 kB / 439.9 MB, free: 0.5469 MB / 298.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001111/0.1156, allocations: 219.7 kB / 440.1 MB, free: 300 kB / 298.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.074e-05/0.1156, allocations: 41.69 kB / 440.1 MB, free: 260 kB / 298.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 6.345e-05/0.1157, allocations: 60.38 kB / 440.2 MB, free: 200 kB / 298.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007165/0.1164, allocations: 0.5158 MB / 440.7 MB, free: 15.66 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.094e-05/0.1164, allocations: 4.188 kB / 440.7 MB, free: 15.66 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.989e-05/0.1165, allocations: 23.94 kB / 440.7 MB, free: 15.64 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.551e-05/0.1165, allocations: 16 kB / 440.7 MB, free: 15.62 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005336/0.117, allocations: 361 kB / 441.1 MB, free: 15.27 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002203/0.1192, allocations: 1.575 MB / 442.7 MB, free: 13.63 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004674/0.1197, allocations: 282.4 kB / 442.9 MB, free: 13.34 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002243/0.1199, allocations: 188.8 kB / 443.1 MB, free: 13.16 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.688e-05/0.12, allocations: 4 kB / 443.1 MB, free: 13.15 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.158e-05/0.12, allocations: 38.56 kB / 443.2 MB, free: 13.11 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=35): time 1.303e-06/0.12, allocations: 4 kB / 443.2 MB, free: 13.1 MB / 314.7 MB
Notification: Performance of matching and sorting (n=42): time 0.003102/0.1231, allocations: 1.412 MB / 444.6 MB, free: 11.64 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.552e-05/0.1232, allocations: 55.41 kB / 444.6 MB, free: 11.57 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001494/0.1233, allocations: 185.6 kB / 444.8 MB, free: 11.38 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 2.449e-05/0.1234, allocations: 37.7 kB / 444.8 MB, free: 11.34 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001313/0.1235, allocations: 275.4 kB / 445.1 MB, free: 11.07 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 9.867e-05/0.1236, allocations: 161.7 kB / 445.3 MB, free: 10.91 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 1.778e-05/0.1236, allocations: 12 kB / 445.3 MB, free: 10.89 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001159/0.1237, allocations: 338.8 kB / 445.6 MB, free: 10.55 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001848/0.1239, allocations: 125.2 kB / 445.7 MB, free: 10.43 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002801/0.1242, allocations: 307.6 kB / 446 MB, free: 10.05 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.003963/0.1282, allocations: 1.187 MB / 447.2 MB, free: 8.785 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.968e-06/0.1282, allocations: 4 kB / 447.2 MB, free: 8.781 MB / 314.7 MB
Notification: Performance of matching and sorting (n=74) (initialization): time 0.0006905/0.1289, allocations: 0.5115 MB / 447.7 MB, free: 8.262 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.854e-05/0.1289, allocations: 8 kB / 447.7 MB, free: 8.254 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.766e-06/0.1289, allocations: 4 kB / 447.7 MB, free: 8.25 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.515e-05/0.129, allocations: 15.92 kB / 447.8 MB, free: 8.234 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004842/0.1295, allocations: 147.8 kB / 447.9 MB, free: 8.09 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.343e-05/0.1295, allocations: 8 kB / 447.9 MB, free: 8.082 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002189/0.1297, allocations: 32.2 kB / 447.9 MB, free: 8.051 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.001e-05/0.1297, allocations: 24 kB / 448 MB, free: 8.027 MB / 314.7 MB
Warning: Assuming fixed start value for the following 8 variables:
         EmptySet.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, 0.0)))) start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         C2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         CP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         M.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         pM.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         Y.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         YP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 25
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (74):
 * Single equations (assignments): 74
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0003341/0.1301, allocations: 224 kB / 448.2 MB, free: 7.801 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.399e-05/0.1301, allocations: 27.7 kB / 448.2 MB, free: 7.773 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.451e-05/0.1302, allocations: 42.94 kB / 448.3 MB, free: 7.73 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.841e-06/0.1303, allocations: 8 kB / 448.3 MB, free: 7.723 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.612e-06/0.1303, allocations: 0 / 448.3 MB, free: 7.723 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.803e-06/0.1303, allocations: 3.984 kB / 448.3 MB, free: 7.719 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001131/0.1314, allocations: 0.905 MB / 449.2 MB, free: 6.754 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.104e-06/0.1314, allocations: 0 / 449.2 MB, free: 6.754 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004135/0.1318, allocations: 83.89 kB / 449.3 MB, free: 6.672 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.496e-06/0.1319, allocations: 0 / 449.3 MB, free: 6.672 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.922e-05/0.1319, allocations: 15.98 kB / 449.3 MB, free: 6.656 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.526e-06/0.1319, allocations: 4 kB / 449.3 MB, free: 6.652 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.393e-06/0.1319, allocations: 4.031 kB / 449.3 MB, free: 6.648 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0006946/0.1326, allocations: 0.6028 MB / 449.9 MB, free: 6.023 MB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 5.195e-05/0.1327, allocations: 92.83 kB / 450 MB, free: 5.914 MB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.763e-05/0.1327, allocations: 12 kB / 450 MB, free: 5.902 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001801/0.1329, allocations: 19.98 kB / 450 MB, free: 5.883 MB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.058e-05/0.133, allocations: 23.97 kB / 450 MB, free: 5.859 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.952e-05/0.133, allocations: 11.98 kB / 450 MB, free: 5.848 MB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0001077/0.1331, allocations: 128 kB / 450.2 MB, free: 5.727 MB / 314.7 MB
Notification: Performance of sort global known variables: time 1.1e-07/0.1331, allocations: 0 / 450.2 MB, free: 5.727 MB / 314.7 MB
Notification: Performance of remove unused functions: time 0.0003765/0.1335, allocations: 100 kB / 450.3 MB, free: 5.629 MB / 314.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 8 (V,EmptySet.c,C2.n,CP.n,M.n,pM.n,Y.n,YP.n)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (42):
 * Single equations (assignments): 42
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001109/0.1336, allocations: 111.7 kB / 450.4 MB, free: 5.512 MB / 314.7 MB
Notification: Performance of simCode: created initialization part: time 0.000528/0.1341, allocations: 401.7 kB / 450.8 MB, free: 5.121 MB / 314.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.746e-06/0.1341, allocations: 4 kB / 450.8 MB, free: 5.117 MB / 314.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0002001/0.1344, allocations: 173.4 kB / 450.9 MB, free: 4.949 MB / 314.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003367/0.1347, allocations: 44.05 kB / 451 MB, free: 4.906 MB / 314.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001963/0.1367, allocations: 1.462 MB / 452.4 MB, free: 3.41 MB / 314.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003803/0.1371, allocations: 0.8154 MB / 453.3 MB, free: 2.566 MB / 314.7 MB
Notification: Performance of simCode: alias equations: time 0.0001715/0.1372, allocations: 38.97 kB / 453.3 MB, free: 2.531 MB / 314.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 9.066e-05/0.1373, allocations: 35.36 kB / 453.3 MB, free: 2.496 MB / 314.7 MB
Notification: Performance of SimCode: time 2.21e-07/0.1373, allocations: 0 / 453.3 MB, free: 2.496 MB / 314.7 MB
Notification: Performance of Templates: time 0.006264/0.1436, allocations: 3.086 MB / 456.4 MB, free: 15.41 MB / 330.7 MB
make -j1 -f BioChem_BioChem.Examples.CellDivison.cell.makefile
(rm -f BioChem_BioChem.Examples.CellDivison.cell.pipe ; mkfifo BioChem_BioChem.Examples.CellDivison.cell.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CellDivison.cell.pipe >> ../files/BioChem_BioChem.Examples.CellDivison.cell.sim & ./BioChem_BioChem.Examples.CellDivison.cell -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CellDivison.cell.pipe 2>&1)