Running: ./testmodel.py --libraries=/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ --ompython_omhome=/usr BioChem_BioChem.Examples.CaOscillations.Cytosol.conf.json
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
Using package ModelicaServices with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Using package Modelica with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package BioChem with version 1.1.2 (/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo)
Running command: translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo): time 0.06687/0.06687, allocations: 12.66 MB / 27.92 MB, free: 0.6094 MB / 18.57 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001291/0.00129, allocations: 185.2 kB / 31.47 MB, free: 3.438 MB / 24.77 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.396/1.396, allocations: 225.7 MB / 260.6 MB, free: 8.695 MB / 202.7 MB
Notification: Performance of loadFile(/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/converted-libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0008049/0.0008049, allocations: 100.3 kB / 314.4 MB, free: 9.848 MB / 250.7 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.0003108/0.0003108, allocations: 6.562 kB / 378.3 MB, free: 52.27 MB / 298.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.09163/0.09195, allocations: 53.09 MB / 431.3 MB, free: 9.922 MB / 298.7 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CaOscillations.Cytosol): time 0.002598/0.0946, allocations: 2.427 MB / 433.8 MB, free: 7.48 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0001879/0.09481, allocations: 191.2 kB / 434 MB, free: 7.293 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 7.386e-05/0.09489, allocations: 8 kB / 434 MB, free: 7.285 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 4.576e-05/0.09495, allocations: 19.88 kB / 434 MB, free: 7.266 MB / 298.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0001132/0.09507, allocations: 35.69 kB / 434 MB, free: 7.23 MB / 298.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0001609/0.09523, allocations: 39.95 kB / 434.1 MB, free: 7.191 MB / 298.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0001311/0.09538, allocations: 183.2 kB / 434.2 MB, free: 7.012 MB / 298.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001783/0.09556, allocations: 86.81 kB / 434.3 MB, free: 6.922 MB / 298.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 4.713e-05/0.09561, allocations: 63.72 kB / 434.4 MB, free: 6.859 MB / 298.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 9.844e-05/0.09572, allocations: 75.56 kB / 434.5 MB, free: 6.785 MB / 298.7 MB
Notification: Performance of NFPackage.collectConstants: time 2.694e-05/0.09575, allocations: 8 kB / 434.5 MB, free: 6.777 MB / 298.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 2.492e-05/0.09578, allocations: 12 kB / 434.5 MB, free: 6.766 MB / 298.7 MB
Notification: Performance of NFScalarize.scalarize: time 3.059e-05/0.09582, allocations: 35.83 kB / 434.5 MB, free: 6.73 MB / 298.7 MB
Notification: Performance of NFVerifyModel.verify: time 6.889e-05/0.09589, allocations: 121 kB / 434.6 MB, free: 6.605 MB / 298.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0001551/0.09605, allocations: 219.2 kB / 434.8 MB, free: 6.391 MB / 298.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.729e-06/0.09607, allocations: 0 / 434.8 MB, free: 6.391 MB / 298.7 MB
Notification: Performance of FrontEnd: time 1.522e-06/0.09607, allocations: 0 / 434.8 MB, free: 6.391 MB / 298.7 MB
Notification: Performance of Transformations before backend: time 4.528e-06/0.09608, allocations: 0 / 434.8 MB, free: 6.391 MB / 298.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 60
 * Number of variables: 60
Notification: Performance of Generate backend data structure: time 0.0005379/0.09662, allocations: 471.4 kB / 435.3 MB, free: 5.879 MB / 298.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.144e-05/0.09666, allocations: 8.031 kB / 435.3 MB, free: 5.871 MB / 298.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.078e-05/0.09671, allocations: 28.66 kB / 435.3 MB, free: 5.844 MB / 298.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 8.741e-05/0.0968, allocations: 184.1 kB / 435.5 MB, free: 5.625 MB / 298.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.686e-05/0.09683, allocations: 20.94 kB / 435.5 MB, free: 5.605 MB / 298.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.651e-05/0.09688, allocations: 28.36 kB / 435.6 MB, free: 5.578 MB / 298.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003007/0.09718, allocations: 205.4 kB / 435.8 MB, free: 5.371 MB / 298.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.352e-05/0.09721, allocations: 4.125 kB / 435.8 MB, free: 5.367 MB / 298.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.008e-05/0.09723, allocations: 15.94 kB / 435.8 MB, free: 5.352 MB / 298.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.562e-06/0.09724, allocations: 4 kB / 435.8 MB, free: 5.348 MB / 298.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001968/0.09744, allocations: 138.2 kB / 435.9 MB, free: 5.215 MB / 298.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001063/0.09851, allocations: 0.7592 MB / 436.7 MB, free: 4.395 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001461/0.09867, allocations: 110.5 kB / 436.8 MB, free: 4.277 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001882/0.09887, allocations: 96.81 kB / 436.9 MB, free: 4.18 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.569e-05/0.09889, allocations: 4 kB / 436.9 MB, free: 4.176 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.322e-05/0.09891, allocations: 34.55 kB / 436.9 MB, free: 4.133 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=15): time 1.172e-06/0.09892, allocations: 0 / 436.9 MB, free: 4.133 MB / 298.7 MB
Notification: Performance of matching and sorting (n=17): time 0.001051/0.09997, allocations: 0.5756 MB / 437.5 MB, free: 3.504 MB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.642e-05/0.1, allocations: 55.31 kB / 437.6 MB, free: 3.438 MB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 9.095e-05/0.1001, allocations: 156.6 kB / 437.7 MB, free: 3.27 MB / 298.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.164e-05/0.1001, allocations: 37.64 kB / 437.7 MB, free: 3.227 MB / 298.7 MB
Notification: Performance of collectInitialEqns (initialization): time 5.037e-05/0.1002, allocations: 147.9 kB / 437.9 MB, free: 3.078 MB / 298.7 MB
Notification: Performance of collectInitialBindings (initialization): time 3.093e-05/0.1002, allocations: 67.09 kB / 438 MB, free: 3.012 MB / 298.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.055e-06/0.1002, allocations: 4 kB / 438 MB, free: 3.008 MB / 298.7 MB
Notification: Performance of setup shared object (initialization): time 4.454e-05/0.1003, allocations: 322.8 kB / 438.3 MB, free: 2.684 MB / 298.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 6.834e-05/0.1004, allocations: 40.22 kB / 438.3 MB, free: 2.645 MB / 298.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 8.597e-05/0.1004, allocations: 94.45 kB / 438.4 MB, free: 2.531 MB / 298.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001338/0.1018, allocations: 407.1 kB / 438.8 MB, free: 2.113 MB / 298.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.794e-06/0.1018, allocations: 4 kB / 438.8 MB, free: 2.109 MB / 298.7 MB
Notification: Performance of matching and sorting (n=28) (initialization): time 0.0002785/0.1021, allocations: 198.5 kB / 439 MB, free: 1.91 MB / 298.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.479e-05/0.1021, allocations: 11.94 kB / 439 MB, free: 1.898 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.859e-06/0.1021, allocations: 4.188 kB / 439 MB, free: 1.895 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.603e-05/0.1021, allocations: 4 kB / 439 MB, free: 1.891 MB / 298.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001855/0.1023, allocations: 51.91 kB / 439.1 MB, free: 1.84 MB / 298.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.343e-06/0.1024, allocations: 0 / 439.1 MB, free: 1.84 MB / 298.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 9.177e-05/0.1024, allocations: 19.84 kB / 439.1 MB, free: 1.82 MB / 298.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.329e-05/0.1025, allocations: 7.984 kB / 439.1 MB, free: 1.812 MB / 298.7 MB
Warning: Assuming fixed start value for the following 5 variables:
         p3_sbml:VARIABLE(start = 0.95 fixed = true )  type: Real
         endoplasmicReticulum.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         endoplasmicReticulum.CaER.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         Ca_Cyt.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (28):
 * Single equations (assignments): 28
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001716/0.1026, allocations: 155.5 kB / 439.3 MB, free: 1.648 MB / 298.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.036e-05/0.1027, allocations: 11.84 kB / 439.3 MB, free: 1.637 MB / 298.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002479/0.1029, allocations: 174.7 kB / 439.4 MB, free: 1.457 MB / 298.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.913e-06/0.1029, allocations: 0 / 439.4 MB, free: 1.457 MB / 298.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.287e-06/0.103, allocations: 0 / 439.4 MB, free: 1.457 MB / 298.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.286e-06/0.103, allocations: 0 / 439.4 MB, free: 1.457 MB / 298.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0005473/0.1035, allocations: 0.5256 MB / 440 MB, free: 0.875 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.313e-06/0.1035, allocations: 0 / 440 MB, free: 0.875 MB / 298.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001812/0.1037, allocations: 31.92 kB / 440 MB, free: 0.8438 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 1.963e-06/0.1037, allocations: 0 / 440 MB, free: 0.8438 MB / 298.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.382e-05/0.1037, allocations: 8 kB / 440 MB, free: 0.8359 MB / 298.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.593e-06/0.1038, allocations: 0 / 440 MB, free: 0.8359 MB / 298.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.51e-07/0.1038, allocations: 0 / 440 MB, free: 0.8359 MB / 298.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002869/0.1041, allocations: 319.5 kB / 440.3 MB, free: 0.5078 MB / 298.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.551e-05/0.1041, allocations: 92.91 kB / 440.4 MB, free: 408 kB / 298.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.271e-05/0.1041, allocations: 0 / 440.4 MB, free: 408 kB / 298.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001069/0.1042, allocations: 8.062 kB / 440.4 MB, free: 400 kB / 298.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.862e-05/0.1043, allocations: 11.92 kB / 440.4 MB, free: 388 kB / 298.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.518e-06/0.1043, allocations: 8 kB / 440.4 MB, free: 380 kB / 298.7 MB
Notification: Performance of sorting global known variables: time 4.561e-05/0.1043, allocations: 113.1 kB / 440.5 MB, free: 268 kB / 298.7 MB
Notification: Performance of sort global known variables: time 1.21e-07/0.1043, allocations: 0 / 440.5 MB, free: 268 kB / 298.7 MB
Notification: Performance of remove unused functions: time 0.0002313/0.1046, allocations: 40 kB / 440.6 MB, free: 228 kB / 298.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (V,endoplasmicReticulum.V,endoplasmicReticulum.CaER.n,Ca_Cyt.n,p3_sbml)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (18):
 * Single equations (assignments): 18
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.229e-05/0.1046, allocations: 103.2 kB / 440.7 MB, free: 116 kB / 298.7 MB
Notification: Performance of simCode: created initialization part: time 0.0002331/0.1049, allocations: 139.8 kB / 440.8 MB, free: 15.97 MB / 314.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.853e-06/0.1049, allocations: 0 / 440.8 MB, free: 15.97 MB / 314.7 MB
Notification: Performance of simCode: created simulation system equations: time 8.849e-05/0.105, allocations: 63.91 kB / 440.9 MB, free: 15.91 MB / 314.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002471/0.1052, allocations: 16.31 kB / 440.9 MB, free: 15.89 MB / 314.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008725/0.1061, allocations: 0.649 MB / 441.5 MB, free: 15.22 MB / 314.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003055/0.1064, allocations: 0.7399 MB / 442.3 MB, free: 14.45 MB / 314.7 MB
Notification: Performance of simCode: alias equations: time 7.927e-05/0.1065, allocations: 21.41 kB / 442.3 MB, free: 14.43 MB / 314.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 4.907e-05/0.1066, allocations: 19.44 kB / 442.3 MB, free: 14.41 MB / 314.7 MB
Notification: Performance of SimCode: time 2.31e-07/0.1066, allocations: 0 / 442.3 MB, free: 14.41 MB / 314.7 MB
Notification: Performance of Templates: time 0.003505/0.1101, allocations: 1.296 MB / 443.6 MB, free: 13.13 MB / 314.7 MB
make -j1 -f BioChem_BioChem.Examples.CaOscillations.Cytosol.makefile
(rm -f BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; mkfifo BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe >> ../files/BioChem_BioChem.Examples.CaOscillations.Cytosol.sim & ./BioChem_BioChem.Examples.CaOscillations.Cytosol -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe 2>&1)