Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001601/0.001601, allocations: 92.2 kB / 20.19 MB, free: 4.359 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00191/0.00191, allocations: 173 kB / 23.49 MB, free: 1.059 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9279/0.9279, allocations: 177.1 MB / 203.8 MB, free: 5.652 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.539/1.539, allocations: 273.5 MB / 0.5213 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.593e-06/1.593e-06, allocations: 0 / 0.6471 GB, free: 38.54 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.134e-05/1.293e-05, allocations: 2.312 kB / 0.6471 GB, free: 38.54 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.006855/0.006868, allocations: 11.71 MB / 0.6585 GB, free: 30.86 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003466/0.01033, allocations: 2.497 MB / 0.6609 GB, free: 29.12 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005011/0.01083, allocations: 21 kB / 0.6609 GB, free: 29.12 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003885/0.01122, allocations: 299 kB / 0.6612 GB, free: 28.95 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0009327/0.01216, allocations: 0.7787 MB / 0.662 GB, free: 28.38 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0009009/0.01306, allocations: 0.5988 MB / 0.6626 GB, free: 28.02 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.00199/0.01505, allocations: 2.874 MB / 0.6654 GB, free: 26.48 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002116/0.01716, allocations: 3.218 MB / 0.6685 GB, free: 24.56 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002204/0.01937, allocations: 2.561 MB / 0.671 GB, free: 23.5 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002418/0.02179, allocations: 1.976 MB / 0.673 GB, free: 22.97 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0005615/0.02235, allocations: 428.7 kB / 0.6734 GB, free: 22.97 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000452/0.0228, allocations: 427.3 kB / 0.6738 GB, free: 22.97 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0005028/0.0233, allocations: 0.932 MB / 0.6747 GB, free: 22.37 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.00119/0.02449, allocations: 1.295 MB / 0.6759 GB, free: 21.75 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002088/0.02658, allocations: 2.602 MB / 0.6785 GB, free: 20.48 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.206e-06/0.02658, allocations: 0 / 0.6785 GB, free: 20.48 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.202e-06/0.02658, allocations: 0.7031 kB / 0.6785 GB, free: 20.48 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 4.938e-05/0.02663, allocations: 0 / 0.6785 GB, free: 20.48 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.00414/0.03077, allocations: 2.89 MB / 0.6813 GB, free: 18.43 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.871e-05/0.03081, allocations: 13.97 kB / 0.6813 GB, free: 18.42 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006733/0.03149, allocations: 376.8 kB / 0.6817 GB, free: 18.25 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.00123/0.03272, allocations: 1.104 MB / 0.6828 GB, free: 17.36 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.422e-05/0.03279, allocations: 134.5 kB / 0.6829 GB, free: 17.3 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003238/0.03311, allocations: 203.6 kB / 0.6831 GB, free: 17.23 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003203/0.03632, allocations: 3.049 MB / 0.6861 GB, free: 15.3 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.113e-05/0.03637, allocations: 12.45 kB / 0.6861 GB, free: 15.29 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002296/0.0366, allocations: 74.34 kB / 0.6861 GB, free: 15.24 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.026e-05/0.03663, allocations: 42.12 kB / 0.6862 GB, free: 15.24 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002797/0.03942, allocations: 2.01 MB / 0.6881 GB, free: 14.51 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008877/0.0483, allocations: 7.123 MB / 0.6951 GB, free: 8.273 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001526/0.04983, allocations: 1.083 MB / 0.6962 GB, free: 7.16 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009339/0.05076, allocations: 0.7343 MB / 0.6969 GB, free: 6.398 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.273e-05/0.05082, allocations: 41.98 kB / 0.6969 GB, free: 6.359 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001352/0.05218, allocations: 1.584 MB / 0.6985 GB, free: 4.68 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003705/0.05588, allocations: 1.849 MB / 0.7003 GB, free: 2.871 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 5.841e-06/0.05589, allocations: 0 / 0.7003 GB, free: 2.871 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.007663/0.06355, allocations: 5.514 MB / 0.7057 GB, free: 13.22 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001445/0.06369, allocations: 401.8 kB / 0.706 GB, free: 12.74 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007252/0.06442, allocations: 0.8697 MB / 0.7069 GB, free: 11.85 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001765/0.0646, allocations: 81.62 kB / 0.707 GB, free: 11.76 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003738/0.06497, allocations: 0.7429 MB / 0.7077 GB, free: 11.01 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004755/0.06545, allocations: 0.7205 MB / 0.7084 GB, free: 10.28 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006773/0.06612, allocations: 0.5877 MB / 0.709 GB, free: 9.684 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001/0.06622, allocations: 480.8 kB / 0.7094 GB, free: 9.211 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001247/0.06747, allocations: 0.9839 MB / 0.7104 GB, free: 8.168 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001533/0.069, allocations: 1.64 MB / 0.712 GB, free: 6.18 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003863/0.07287, allocations: 3.386 MB / 0.7153 GB, free: 2.43 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.69e-06/0.07287, allocations: 0 / 0.7153 GB, free: 2.43 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.003764/0.07664, allocations: 3.056 MB / 0.7183 GB, free: 15.25 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001016/0.07674, allocations: 263.3 kB / 0.7185 GB, free: 14.94 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.412e-05/0.07675, allocations: 12 kB / 0.7185 GB, free: 14.93 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.588e-05/0.07678, allocations: 24 kB / 0.7186 GB, free: 14.91 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001836/0.07861, allocations: 0.8308 MB / 0.7194 GB, free: 14.07 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.398e-05/0.07864, allocations: 31.92 kB / 0.7194 GB, free: 14.04 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001063/0.0797, allocations: 95.95 kB / 0.7195 GB, free: 13.95 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002242/0.07992, allocations: 219.7 kB / 0.7197 GB, free: 13.73 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007482/0.08067, allocations: 0.5717 MB / 0.7203 GB, free: 13.15 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004468/0.08112, allocations: 231 kB / 0.7205 GB, free: 12.93 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0036/0.08472, allocations: 2.729 MB / 0.7232 GB, free: 10.21 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.919e-06/0.08473, allocations: 16 kB / 0.7232 GB, free: 10.2 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.381e-06/0.08473, allocations: 0 / 0.7232 GB, free: 10.2 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.263e-05/0.08475, allocations: 11.97 kB / 0.7232 GB, free: 10.19 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00482/0.08957, allocations: 3.645 MB / 0.7267 GB, free: 6.445 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.458e-06/0.08957, allocations: 4 kB / 0.7267 GB, free: 6.441 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001376/0.09095, allocations: 443.2 kB / 0.7272 GB, free: 6.008 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 8.336e-06/0.09096, allocations: 8 kB / 0.7272 GB, free: 6 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001438/0.0911, allocations: 107.8 kB / 0.7273 GB, free: 5.895 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.434e-06/0.09111, allocations: 11.56 kB / 0.7273 GB, free: 5.887 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.704e-06/0.09111, allocations: 0 / 0.7273 GB, free: 5.887 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004117/0.09523, allocations: 3.106 MB / 0.7303 GB, free: 2.68 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005647/0.09579, allocations: 386.6 kB / 0.7307 GB, free: 2.301 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002419/0.09603, allocations: 63.83 kB / 0.7307 GB, free: 2.238 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007866/0.09682, allocations: 79.94 kB / 0.7308 GB, free: 2.16 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002573/0.09708, allocations: 169.7 kB / 0.731 GB, free: 1.992 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001314/0.09721, allocations: 111.8 kB / 0.7311 GB, free: 1.883 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0004778/0.09769, allocations: 0.5959 MB / 0.7317 GB, free: 1.277 MB / 0.5574 GB Notification: Performance of sort global known variables: time 5e-08/0.09769, allocations: 0 / 0.7317 GB, free: 1.277 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.00111/0.0988, allocations: 0.6328 MB / 0.7323 GB, free: 0.6445 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002613/0.09906, allocations: 207.7 kB / 0.7325 GB, free: 448 kB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002768/0.1018, allocations: 2.681 MB / 0.7351 GB, free: 13.56 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 2.385e-06/0.1018, allocations: 0 / 0.7351 GB, free: 13.56 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001208/0.103, allocations: 1.195 MB / 0.7363 GB, free: 12.29 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001592/0.1046, allocations: 0.5707 MB / 0.7368 GB, free: 11.75 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005899/0.1105, allocations: 5.144 MB / 0.7419 GB, free: 6.703 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002089/0.1107, allocations: 329.7 kB / 0.7422 GB, free: 6.355 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001195/0.1119, allocations: 499 kB / 0.7426 GB, free: 5.996 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0008699/0.1128, allocations: 328 kB / 0.743 GB, free: 5.676 MB / 0.573 GB Notification: Performance of SimCode: time 9.12e-07/0.1128, allocations: 0 / 0.743 GB, free: 5.676 MB / 0.573 GB Notification: Performance of Templates: time 0.04124/0.154, allocations: 41.57 MB / 0.7836 GB, free: 13.02 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.440155400894582]