Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001493/0.001493, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001046/0.001046, allocations: 173 kB / 23.49 MB, free: 1.059 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9046/0.9046, allocations: 177.1 MB / 203.8 MB, free: 5.621 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.486/1.486, allocations: 273.5 MB / 0.5213 GB, free: 14.71 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.814e-06/1.814e-06, allocations: 3.938 kB / 0.647 GB, free: 38.61 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.508e-05/1.689e-05, allocations: 5.266 kB / 0.647 GB, free: 38.6 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic): time 0.007569/0.007586, allocations: 13.35 MB / 0.66 GB, free: 29.85 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002945/0.01053, allocations: 2.676 MB / 0.6626 GB, free: 27.96 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005543/0.01108, allocations: 23.81 kB / 0.6627 GB, free: 27.95 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003876/0.01147, allocations: 306.6 kB / 0.6629 GB, free: 27.78 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0009624/0.01243, allocations: 0.9032 MB / 0.6638 GB, free: 27.11 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007572/0.01319, allocations: 0.6781 MB / 0.6645 GB, free: 26.65 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001886/0.01508, allocations: 3.266 MB / 0.6677 GB, free: 24.8 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005034/0.01558, allocations: 460.6 kB / 0.6681 GB, free: 24.53 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00121/0.01679, allocations: 1.655 MB / 0.6697 GB, free: 23.79 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0008518/0.01764, allocations: 0.9379 MB / 0.6707 GB, free: 23.46 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002695/0.01791, allocations: 287.8 kB / 0.6709 GB, free: 23.45 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000315/0.01823, allocations: 286.2 kB / 0.6712 GB, free: 23.45 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002023/0.01843, allocations: 0.5004 MB / 0.6717 GB, free: 23.08 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0007141/0.01914, allocations: 0.9568 MB / 0.6726 GB, free: 22.64 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001257/0.0204, allocations: 1.907 MB / 0.6745 GB, free: 21.62 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.126e-06/0.0204, allocations: 1.5 kB / 0.6745 GB, free: 21.62 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.31e-07/0.0204, allocations: 3.938 kB / 0.6745 GB, free: 21.61 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 3.671e-05/0.02044, allocations: 0 / 0.6745 GB, free: 21.61 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 402 * Number of variables: 402 Notification: Performance of Generate backend data structure: time 0.002669/0.02311, allocations: 3.224 MB / 0.6776 GB, free: 19.2 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.492e-05/0.02315, allocations: 10.78 kB / 0.6777 GB, free: 19.2 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003853/0.02353, allocations: 376.6 kB / 0.678 GB, free: 19.04 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009295/0.02446, allocations: 0.9556 MB / 0.6789 GB, free: 18.37 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.53e-05/0.02453, allocations: 120.8 kB / 0.6791 GB, free: 18.32 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001851/0.02471, allocations: 194.1 kB / 0.6792 GB, free: 18.25 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.00179/0.0265, allocations: 1.814 MB / 0.681 GB, free: 17.16 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.409e-05/0.02656, allocations: 31.69 kB / 0.681 GB, free: 17.14 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000101/0.02667, allocations: 70.34 kB / 0.6811 GB, free: 17.1 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.687e-05/0.02669, allocations: 41.34 kB / 0.6812 GB, free: 17.09 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001295/0.02799, allocations: 1.353 MB / 0.6825 GB, free: 16.39 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004303/0.03229, allocations: 5.125 MB / 0.6875 GB, free: 12.88 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001367/0.03366, allocations: 1.426 MB / 0.6889 GB, free: 11.91 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006268/0.03428, allocations: 0.929 MB / 0.6898 GB, free: 11.11 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.872e-05/0.03435, allocations: 34.94 kB / 0.6898 GB, free: 11.11 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001323/0.03568, allocations: 2.63 MB / 0.6924 GB, free: 8.645 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=264): time 4.438e-06/0.03568, allocations: 0 / 0.6924 GB, free: 8.645 MB / 0.5262 GB Notification: Performance of matching and sorting (n=282): time 0.006937/0.04262, allocations: 8.787 MB / 0.701 GB, free: 0.6172 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0004607/0.04308, allocations: 1.652 MB / 0.7026 GB, free: 14.59 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001218/0.0443, allocations: 1.111 MB / 0.7037 GB, free: 13.45 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.000162/0.04446, allocations: 117.7 kB / 0.7038 GB, free: 13.32 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004905/0.04495, allocations: 0.7547 MB / 0.7045 GB, free: 12.56 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0006327/0.04558, allocations: 0.9106 MB / 0.7054 GB, free: 11.64 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006016/0.04618, allocations: 486.6 kB / 0.7059 GB, free: 11.16 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0001077/0.04629, allocations: 480.7 kB / 0.7063 GB, free: 10.68 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00124/0.04753, allocations: 1.176 MB / 0.7075 GB, free: 9.348 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001735/0.04926, allocations: 2.22 MB / 0.7096 GB, free: 6.512 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00376/0.05303, allocations: 4.222 MB / 0.7138 GB, free: 1.48 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.805e-05/0.05304, allocations: 4 kB / 0.7138 GB, free: 1.477 MB / 0.5418 GB Notification: Performance of matching and sorting (n=426) (initialization): time 0.004019/0.05706, allocations: 3.632 MB / 0.7173 GB, free: 13.54 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002614/0.05732, allocations: 0.6687 MB / 0.718 GB, free: 12.72 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.967e-05/0.05735, allocations: 20 kB / 0.718 GB, free: 12.7 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.795e-05/0.0574, allocations: 40 kB / 0.718 GB, free: 12.66 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001729/0.05913, allocations: 0.6676 MB / 0.7187 GB, free: 11.99 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.185e-05/0.05918, allocations: 51.42 kB / 0.7187 GB, free: 11.95 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001039/0.06022, allocations: 143.9 kB / 0.7189 GB, free: 11.8 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001738/0.06039, allocations: 124 kB / 0.719 GB, free: 11.68 MB / 0.5574 GB Warning: Assuming fixed start value for the following 84 variables: ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 174 ($PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (402): * Single equations (assignments): 378 * Array equations: 0 * Algorithm blocks: 24 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001164/0.06156, allocations: 1.288 MB / 0.7202 GB, free: 10.32 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004078/0.06197, allocations: 342.7 kB / 0.7206 GB, free: 9.984 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002671/0.06223, allocations: 200.9 kB / 0.7208 GB, free: 9.785 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.541e-05/0.06225, allocations: 24 kB / 0.7208 GB, free: 9.762 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.317e-05/0.06226, allocations: 4 kB / 0.7208 GB, free: 9.758 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.852e-05/0.06228, allocations: 15.89 kB / 0.7208 GB, free: 9.742 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005998/0.06828, allocations: 5.458 MB / 0.7261 GB, free: 4.016 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.456e-06/0.06829, allocations: 4 kB / 0.7261 GB, free: 4.012 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00164/0.06993, allocations: 427.4 kB / 0.7265 GB, free: 3.594 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.389e-05/0.06994, allocations: 8 kB / 0.7265 GB, free: 3.586 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001684/0.07011, allocations: 91.95 kB / 0.7266 GB, free: 3.496 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.293e-05/0.07012, allocations: 19.98 kB / 0.7267 GB, free: 3.477 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.923e-06/0.07012, allocations: 0 / 0.7267 GB, free: 3.477 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004829/0.07495, allocations: 5.094 MB / 0.7316 GB, free: 13.97 MB / 0.573 GB Notification: Performance of postOpt removeConstants (simulation): time 0.000726/0.07568, allocations: 430.4 kB / 0.732 GB, free: 13.55 MB / 0.573 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003504/0.07603, allocations: 120 kB / 0.7322 GB, free: 13.43 MB / 0.573 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000884/0.07691, allocations: 103.1 kB / 0.7322 GB, free: 13.33 MB / 0.573 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004206/0.07733, allocations: 247.3 kB / 0.7325 GB, free: 13.09 MB / 0.573 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001407/0.07747, allocations: 103.9 kB / 0.7326 GB, free: 12.99 MB / 0.573 GB Notification: Performance of sorting global known variables: time 0.0007755/0.07825, allocations: 0.674 MB / 0.7332 GB, free: 12.31 MB / 0.573 GB Notification: Performance of sort global known variables: time 1.1e-07/0.07825, allocations: 0 / 0.7332 GB, free: 12.31 MB / 0.573 GB Notification: Performance of remove unused functions: time 0.001577/0.07983, allocations: 0.6523 MB / 0.7339 GB, free: 11.66 MB / 0.573 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 54 (ref_low.central.C,ref_low.central.AUC,ref_low.elim.MExc,ref_low.periodicDose.TotalCumulativeMass,ref_low.periodicDose.absorptionLumen.C,ref_low.periodicDose.absorptionLumen.AUC,ref_low.periodicDose.variableDose.TotalCumulativeMass,ref_low.peripheral.C,ref_low.peripheral.AUC,ref_high.central.C,ref_high.central.AUC,ref_high.elim.MExc,ref_high.periodicDose.TotalCumulativeMass,ref_high.periodicDose.absorptionLumen.C,ref_high.periodicDose.absorptionLumen.AUC,ref_high.periodicDose.variableDose.TotalCumulativeMass,ref_high.peripheral.C,ref_high.peripheral.AUC,ref.central.C,ref.central.AUC,ref.elim.MExc,ref.periodicDose.TotalCumulativeMass,ref.periodicDose.absorptionLumen.C,ref.periodicDose.absorptionLumen.AUC,ref.periodicDose.variableDose.TotalCumulativeMass,ref.peripheral.C,ref.peripheral.AUC,patient_low.central.C,patient_low.central.AUC,patient_low.elim.MExc,patient_low.periodicDose.TotalCumulativeMass,patient_low.periodicDose.absorptionLumen.C,patient_low.periodicDose.absorptionLumen.AUC,patient_low.periodicDose.variableDose.TotalCumulativeMass,patient_low.peripheral.C,patient_low.peripheral.AUC,patient_high.central.C,patient_high.central.AUC,patient_high.elim.MExc,patient_high.periodicDose.TotalCumulativeMass,patient_high.periodicDose.absorptionLumen.C,patient_high.periodicDose.absorptionLumen.AUC,patient_high.periodicDose.variableDose.TotalCumulativeMass,patient_high.peripheral.C,patient_high.peripheral.AUC,patient.central.C,patient.central.AUC,patient.elim.MExc,patient.periodicDose.TotalCumulativeMass,patient.periodicDose.absorptionLumen.C,patient.periodicDose.absorptionLumen.AUC,patient.periodicDose.variableDose.TotalCumulativeMass,patient.peripheral.C,patient.peripheral.AUC) * Number of discrete variables: 108 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,ref_low.central.Cmax,ref_low.central.Cmin,ref_low.central.rising,ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.rising,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmax,ref_low.peripheral.Cmin,ref_low.peripheral.rising,$whenCondition14,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13,ref_high.central.Cmax,ref_high.central.Cmin,ref_high.central.rising,ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.rising,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmax,ref_high.peripheral.Cmin,ref_high.peripheral.rising,$whenCondition21,$whenCondition15,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,ref.central.Cmax,ref.central.Cmin,ref.central.rising,ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.rising,ref.periodicDose.pulse.T_start,ref.periodicDose.pulse.count,ref.peripheral.Cmax,ref.peripheral.Cmin,ref.peripheral.rising,$whenCondition28,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,$whenCondition26,$whenCondition27,patient_low.central.Cmax,patient_low.central.Cmin,patient_low.central.rising,patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.rising,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmax,patient_low.peripheral.Cmin,patient_low.peripheral.rising,$whenCondition35,$whenCondition29,$whenCondition30,$whenCondition31,$whenCondition32,$whenCondition33,$whenCondition34,patient_high.central.Cmax,patient_high.central.Cmin,patient_high.central.rising,patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.rising,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmax,patient_high.peripheral.Cmin,patient_high.peripheral.rising,$whenCondition42,$whenCondition36,$whenCondition37,$whenCondition38,$whenCondition39,$whenCondition40,$whenCondition41,patient.central.Cmax,patient.central.Cmin,patient.central.rising,patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.rising,patient.periodicDose.pulse.T_start,patient.periodicDose.pulse.count,patient.peripheral.Cmax,patient.peripheral.Cmin,patient.peripheral.rising) * Number of discrete states: 96 (patient.periodicDose.pulse.count,patient.peripheral.Cmin,$whenCondition41,patient.peripheral.Cmax,$whenCondition40,patient.peripheral.rising,patient.periodicDose.absorptionLumen.Cmin,$whenCondition39,patient.periodicDose.absorptionLumen.Cmax,$whenCondition38,patient.periodicDose.absorptionLumen.rising,patient.central.Cmin,$whenCondition37,patient.central.Cmax,$whenCondition36,patient.central.rising,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmin,$whenCondition34,patient_high.peripheral.Cmax,$whenCondition33,patient_high.peripheral.rising,patient_high.periodicDose.absorptionLumen.Cmin,$whenCondition32,patient_high.periodicDose.absorptionLumen.Cmax,$whenCondition31,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.Cmin,$whenCondition30,patient_high.central.Cmax,$whenCondition29,patient_high.central.rising,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmin,$whenCondition27,patient_low.peripheral.Cmax,$whenCondition26,patient_low.peripheral.rising,patient_low.periodicDose.absorptionLumen.Cmin,$whenCondition25,patient_low.periodicDose.absorptionLumen.Cmax,$whenCondition24,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.Cmin,$whenCondition23,patient_low.central.Cmax,$whenCondition22,patient_low.central.rising,ref.periodicDose.pulse.count,ref.peripheral.Cmin,$whenCondition20,ref.peripheral.Cmax,$whenCondition19,ref.peripheral.rising,ref.periodicDose.absorptionLumen.Cmin,$whenCondition18,ref.periodicDose.absorptionLumen.Cmax,$whenCondition17,ref.periodicDose.absorptionLumen.rising,ref.central.Cmin,$whenCondition16,ref.central.Cmax,$whenCondition15,ref.central.rising,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmin,$whenCondition13,ref_high.peripheral.Cmax,$whenCondition12,ref_high.peripheral.rising,ref_high.periodicDose.absorptionLumen.Cmin,$whenCondition11,ref_high.periodicDose.absorptionLumen.Cmax,$whenCondition10,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.Cmin,$whenCondition9,ref_high.central.Cmax,$whenCondition8,ref_high.central.rising,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmin,$whenCondition6,ref_low.peripheral.Cmax,$whenCondition5,ref_low.peripheral.rising,ref_low.periodicDose.absorptionLumen.Cmin,$whenCondition4,ref_low.periodicDose.absorptionLumen.Cmax,$whenCondition3,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.Cmin,$whenCondition2,ref_low.central.Cmax,$whenCondition1,ref_low.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (228): * Single equations (assignments): 198 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000352/0.08018, allocations: 343.8 kB / 0.7342 GB, free: 11.32 MB / 0.573 GB Notification: Performance of simCode: created initialization part: time 0.003307/0.08349, allocations: 4.062 MB / 0.7382 GB, free: 6.703 MB / 0.573 GB Notification: Performance of simCode: created event and clocks part: time 2.034e-06/0.08349, allocations: 0 / 0.7382 GB, free: 6.703 MB / 0.573 GB Notification: Performance of simCode: created simulation system equations: time 0.001698/0.08519, allocations: 2.338 MB / 0.7405 GB, free: 4.027 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002465/0.08765, allocations: 0.7144 MB / 0.7412 GB, free: 3.371 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007772/0.09542, allocations: 5.869 MB / 0.7469 GB, free: 13.49 MB / 0.5887 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003632/0.09579, allocations: 393.6 kB / 0.7473 GB, free: 13.08 MB / 0.5887 GB Notification: Performance of simCode: alias equations: time 0.0007501/0.09654, allocations: 238.8 kB / 0.7475 GB, free: 12.86 MB / 0.5887 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003599/0.0969, allocations: 168.5 kB / 0.7476 GB, free: 12.69 MB / 0.5887 GB Notification: Performance of SimCode: time 1.022e-06/0.0969, allocations: 0 / 0.7476 GB, free: 12.69 MB / 0.5887 GB Notification: Performance of Templates: time 0.03825/0.1351, allocations: 36.04 MB / 0.7828 GB, free: 10.5 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.267512534977868]